HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275201 chr6:32656723 HLA-DQB1 [+20563bp] C - 10 A vs. G - - <1 (-) 14 (-) <0.05
rs4959106 chr6:32583159 HLA-DQA1 [-12797bp] All: C 45,262 5 T vs. C 0.492 (T) 0.408 (C) 1.14 (1.07-1.22) 27 (0-71) 1.67e-04
rs9271149 chr6:32577455 HLA-DQA1 [-18501bp] All: C 84,927 7 A vs. G 0.367 (A) 0.192 (A) 1.11 (1.05-1.17) 0 (0-59) 1.67e-04
rs9275203 chr6:32656947 HLA-DQB1 [+20787bp] C - 10 A vs. G - - <1 (-) 13 (-) <0.05
rs482205 chr6:32576009 HLA-DRB1 [+18384bp] All: C 70,102 3 G vs. T 0.467 (G) 0.2 (G) 0.91 (0.87-0.96) 0 (0-72) 1.68e-04
rs6905775 chr6:32626021 HLA-DQB1 [-1223bp] C - 4 A vs. G 0.217 (A) 0.325 (A) <1 (-) 0 (-) <0.05
rs9271776 chr6:32594341 HLA-DQA1 [-1615bp] All: C 44,247 3 C vs. T 0.375 (C) 0.392 (C) 0.89 (0.84-0.95) 0 (0-44) 1.71e-04
rs9271179 chr6:32578196 HLA-DQA1 [-17760bp] All: C 84,927 7 G vs. A 0.35 (G) 0.2 (G) 1.11 (1.05-1.17) 0 (0-62) 1.74e-04
rs9271774 chr6:32594309 HLA-DQA1 [-1647bp] All: C 80,956 5 A vs. C 0.233 (A) 0.25 (A) 1.12 (1.06-1.19) 60 (0-85) 1.76e-04
rs28383314 chr6:32587213 HLA-DQA1 [-8743bp] All: C 96,077 11 T vs. C 0.317 (T) 0.233 (T) 1.10 (1.05-1.16) 27 (0-64) 1.77e-04
rs12211942 chr6:32571897 HLA-DRB1 [+14272bp] All: C 8,889 3 G vs. A 0.333 (G) - 0.80 (0.71-0.90) 0 (0-89) 1.79e-04
rs34850435 chr6:32583299 HLA-DQA1 [-12657bp] All: C 45,262 5 C vs. T 0.475 (C) 0.433 (T) 1.14 (1.06-1.22) 28 (0-72) 1.81e-04
rs9271178 chr6:32578191 HLA-DQA1 [-17765bp] All: C 84,927 7 C vs. T 0.35 (C) 0.2 (C) 1.11 (1.05-1.17) 0 (0-62) 1.82e-04
rs9275189 chr6:32656137 HLA-DQB1 [+19977bp] All: C 93,567 12 G vs. A 0.35 (G) - 0.91 (0.86-0.96) 0 (0-44) 1.83e-04
rs1846190 chr6:32583813 HLA-DQA1 [-12143bp] All: C 42,293 4 A vs. G 0.367 (A) 0.317 (A) 0.85 (0.78-0.93) 0 (0-79) 1.92e-04
rs9275221 chr6:32659099 HLA-DQB1 [+22939bp] C - 10 T vs. C 0.158 (C) 0.1 (C) >1 (-) 11 (-) <0.05
rs9275207 chr6:32657710 HLA-DQB1 [+21550bp] C - 10 A vs. G 0.167 (G) - >1 (-) 13 (-) <0.05
rs9275213 chr6:32658335 HLA-DQB1 [+22175bp] C - 10 T vs. C 0.175 (C) 0.042 (C) >1 (-) 14 (-) <0.05
rs9271655 chr6:32592567 HLA-DQA1 [-3389bp] All: C 44,247 3 G vs. A 0.267 (G) - 1.15 (1.07-1.24) 0 (0-84) 2.10e-04
rs9271769 chr6:32594217 HLA-DQA1 [-1739bp] All: C 44,247 3 T vs. G 0.383 (T) 0.392 (T) 0.89 (0.83-0.94) 0 (0-55) 2.13e-04
rs9271069 chr6:32575700 HLA-DRB1 [+18075bp] All: C 78,022 6 A vs. G 0.208 (A) 0.167 (A) 1.14 (1.06-1.23) 60 (3-84) 2.17e-04
rs481139 chr6:32576145 HLA-DRB1 [+18520bp] All: C 70,102 3 A vs. C 0.475 (A) 0.2 (A) 0.91 (0.87-0.96) 0 (0-69) 2.24e-04
rs35928237 chr6:32583461 HLA-DQA1 [-12495bp] All: C 45,262 5 C vs. T - - 1.15 (1.07-1.23) 12 (0-82) 2.29e-04
rs9275206 chr6:32657565 HLA-DQB1 [+21405bp] C - 10 A vs. G 0.158 (G) 0.092 (G) >1 (-) 15 (-) <0.05
rs9271146 chr6:32577282 HLA-DQA1 [-18674bp] All: C 84,927 7 A vs. C 0.358 (A) 0.125 (A) 1.11 (1.05-1.17) 0 (0-59) 2.30e-04
rs35534739 chr6:32583490 HLA-DQA1 [-12466bp] All: C 45,262 5 A vs. G 0.492 (A) 0.342 (G) 1.15 (1.07-1.24) 13 (0-82) 2.42e-04
rs34341844 chr6:32583496 HLA-DQA1 [-12460bp] All: C 45,262 5 G vs. A 0.483 (G) 0.383 (A) 1.15 (1.07-1.24) 13 (0-82) 2.43e-04
rs9271172 chr6:32577975 HLA-DQA1 [-17981bp] All: C 85,373 8 C vs. T 0.383 (C) 0.183 (C) 1.10 (1.04-1.16) 0 (0-56) 2.52e-04
rs9271093 chr6:32576341 HLA-DRB1 [+18716bp] All: C 78,022 6 G vs. A 0.208 (G) 0.158 (G) 1.13 (1.06-1.20) 66 (20-86) 2.53e-04
rs35029150 chr6:32583426 HLA-DQA1 [-12530bp] All: C 45,262 5 T vs. G 0.483 (T) 0.392 (G) 1.14 (1.06-1.23) 11 (0-82) 2.57e-04
rs9271173 chr6:32577981 HLA-DQA1 [-17975bp] All: C 85,373 8 A vs. G 0.367 (A) 0.183 (A) 1.10 (1.04-1.15) 0 (0-56) 2.58e-04
rs9275191 chr6:32656235 HLA-DQB1 [+20075bp] All: C 93,567 12 C vs. T 0.292 (C) 0.425 (T) 0.91 (0.87-0.96) 0 (0-38) 2.61e-04
rs685244 chr6:32584769 HLA-DQA1 [-11187bp] All: C 45,262 5 A vs. G 0.383 (A) 0.342 (G) 1.15 (1.07-1.24) 45 (0-80) 2.65e-04
rs9275214 chr6:32658665 HLA-DQB1 [+22505bp] C - 10 A vs. G 0.167 (A) 0.058 (A) <1 (-) 15 (-) <0.05
rs9271082 chr6:32576086 HLA-DRB1 [+18461bp] All: C 78,022 6 T vs. C 0.233 (T) 0.167 (T) 1.13 (1.06-1.20) 67 (22-86) 2.76e-04
rs9275223 chr6:32659839 HLA-DQB1 [+23679bp] C - 8 A vs. G 0.175 (A) 0.075 (A) <1 (-) 25 (-) <0.05
rs3104391 chr6:32594901 HLA-DQA1 [-1055bp] C - 3 T vs. C 0.25 (T) 0.133 (T) >1 (-) 0 (-) <0.05
rs34537691 chr6:32584295 HLA-DQA1 [-11661bp] All: C 45,262 5 A vs. G 0.475 (A) - 1.17 (1.07-1.27) 0 (0-65) 2.89e-04
rs9271080 chr6:32576076 HLA-DRB1 [+18451bp] All: C 78,022 6 C vs. T 0.217 (C) 0.167 (C) 1.12 (1.06-1.20) 67 (23-86) 2.93e-04
rs28383223 chr6:32583477 HLA-DQA1 [-12479bp] C - 4 T vs. C 0.358 (C) 0.3 (T) <1 (-) 0 (-) <0.05
rs9275190 chr6:32656228 HLA-DQB1 [+20068bp] All: C 93,567 12 G vs. A 0.267 (G) 0.442 (A) 0.91 (0.87-0.96) 0 (0-40) 2.98e-04
rs9271163 chr6:32577733 HLA-DQA1 [-18223bp] All: C 84,927 7 C vs. T 0.383 (C) 0.183 (C) 1.10 (1.04-1.16) 0 (0-61) 3.02e-04
rs9271775 chr6:32594328 HLA-DQA1 [-1628bp] All: C 80,956 5 C vs. T 0.217 (C) 0.225 (C) 1.12 (1.05-1.20) 46 (0-80) 3.16e-04
rs9271693 chr6:32593033 HLA-DQA1 [-2923bp] All: C 44,247 3 T vs. C 0.383 (T) 0.383 (T) 0.87 (0.81-0.94) 0 (0-88) 3.42e-04
rs28752509 chr6:32579623 HLA-DQA1 [-16333bp] C - 5 T vs. C 0.475 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs28752510 chr6:32579626 HLA-DQA1 [-16330bp] C - 5 A vs. G 0.475 (A) 0.358 (A) <1 (-) 0 (-) <0.05
rs9271685 chr6:32592970 HLA-DQA1 [-2986bp] All: C 44,247 3 C vs. T 0.4 (C) 0.375 (C) 0.87 (0.81-0.94) 0 (0-89) 3.61e-04
rs9271660 chr6:32592602 HLA-DQA1 [-3354bp] All: C 44,247 3 G vs. T 0.383 (G) 0.4 (G) 0.87 (0.81-0.94) 0 (0-89) 3.62e-04
rs9271675 chr6:32592862 HLA-DQA1 [-3094bp] All: C 44,247 3 C vs. T 0.383 (C) 0.35 (C) 0.87 (0.81-0.94) 0 (0-89) 3.68e-04
rs9271674 chr6:32592845 HLA-DQA1 [-3111bp] All: C 44,247 3 C vs. T 0.392 (C) 0.35 (C) 0.87 (0.81-0.94) 0 (0-89) 3.69e-04

Association studies for this region [+]