HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271063 chr6:32575584 HLA-DRB1 [+17959bp] C - 4 A vs. G 0.375 (A) 0.175 (A) >1 (-) 27 (-) <0.05
rs28383312 chr6:32587090 HLA-DQA1 [-8866bp] All: C 42,293 4 T vs. C 0.442 (T) 0.392 (T) 0.88 (0.81-0.96) 0 (0-73) 0.003
rs9271064 chr6:32575601 HLA-DRB1 [+17976bp] C - 4 A vs. G 0.367 (A) 0.183 (A) >1 (-) 27 (-) <0.05
rs9271108 chr6:32576633 HLA-DRB1 [+19008bp] C - 4 A vs. G 0.375 (G) 0.192 (G) <1 (-) 5 (-) <0.05
rs9271097 chr6:32576439 HLA-DRB1 [+18814bp] C - 4 C vs. G 0.375 (C) 0.208 (C) >1 (-) 11 (-) <0.05
rs9271026 chr6:32574994 HLA-DRB1 [+17369bp] C - 4 T vs. C - - >1 (-) 36 (-) <0.05
rs9271202 chr6:32578837 HLA-DQA1 [-17119bp] C - 5 A vs. C 0.375 (A) 0.183 (A) >1 (-) 9 (-) <0.05
rs9271096 chr6:32576426 HLA-DRB1 [+18801bp] C - 4 A vs. G 0.35 (A) 0.192 (A) >1 (-) 9 (-) <0.05
rs9270854 chr6:32570809 HLA-DRB1 [+13184bp] C - 4 A vs. G 0.375 (A) 0.208 (A) >1 (-) 0 (-) <0.05
rs9271032 chr6:32575119 HLA-DRB1 [+17494bp] C - 4 T vs. C - - <1 (-) 35 (-) <0.05
rs2856693 chr6:32653283 HLA-DQB1 [+17123bp] All: C 100,472 13 T vs. C 0.442 (T) 0.292 (C) 0.94 (0.91-0.98) 24 (0-61) 0.003
rs9271104 chr6:32576561 HLA-DRB1 [+18936bp] C - 4 A vs. G 0.383 (G) 0.183 (G) <1 (-) 4 (-) <0.05
rs9270908 chr6:32572148 HLA-DRB1 [+14523bp] C - 4 A vs. G 0.375 (G) 0.183 (G) <1 (-) 30 (-) <0.05
rs9271101 chr6:32576493 HLA-DRB1 [+18868bp] C - 4 T vs. C 0.358 (C) 0.183 (C) <1 (-) 0 (-) <0.05
rs9271557 chr6:32590331 HLA-DQA1 [-5625bp] C - 4 T vs. C - - >1 (-) 0 (-) <0.05
rs9270853 chr6:32570800 HLA-DRB1 [+13175bp] C - 4 A vs. G 0.375 (G) 0.208 (G) <1 (-) 0 (-) <0.05
rs9271100 chr6:32576478 HLA-DRB1 [+18853bp] C - 4 T vs. C 0.35 (T) 0.183 (T) >1 (-) 0 (-) <0.05
rs9271556 chr6:32590324 HLA-DQA1 [-5632bp] C - 4 T vs. G - - >1 (-) 0 (-) <0.05
rs9270856 chr6:32570839 HLA-DRB1 [+13214bp] C - 4 A vs. G 0.367 (A) 0.192 (A) >1 (-) 0 (-) <0.05
rs9271105 chr6:32576577 HLA-DRB1 [+18952bp] C - 4 T vs. G 0.375 (T) 0.183 (T) >1 (-) 5 (-) <0.05
rs9270852 chr6:32570797 HLA-DRB1 [+13172bp] C - 4 A vs. G 0.392 (G) 0.208 (G) <1 (-) 0 (-) <0.05
rs9271482 chr6:32588880 HLA-DQA1 [-7076bp] C - 3 T vs. C 0.45 (C) 0.442 (C) <1 (-) 0 (-) <0.05
rs9271483 chr6:32588882 HLA-DQA1 [-7074bp] C - 3 T vs. G 0.458 (G) 0.417 (G) <1 (-) 0 (-) <0.05
rs9271006 chr6:32574602 HLA-DRB1 [+16977bp] C - 4 T vs. C 0.4 (T) 0.183 (T) >1 (-) 43 (-) <0.05
rs9271022 chr6:32574881 HLA-DRB1 [+17256bp] C - 4 A vs. G 0.442 (A) - >1 (-) 39 (-) <0.05
rs9270913 chr6:32572229 HLA-DRB1 [+14604bp] C - 4 A vs. G 0.392 (A) 0.192 (A) >1 (-) 34 (-) <0.05
rs9270912 chr6:32572224 HLA-DRB1 [+14599bp] C - 4 A vs. G 0.392 (A) 0.192 (A) >1 (-) 34 (-) <0.05
rs9271201 chr6:32578818 HLA-DQA1 [-17138bp] C - 5 A vs. C 0.35 (C) 0.183 (C) <1 (-) 10 (-) <0.05
rs9270945 chr6:32572948 HLA-DRB1 [+15323bp] C - 4 A vs. C 0.392 (A) 0.233 (A) >1 (-) 42 (-) <0.05
rs9271019 chr6:32574808 HLA-DRB1 [+17183bp] C - 4 A vs. G 0.417 (G) 0.183 (G) <1 (-) 42 (-) <0.05
rs9271098 chr6:32576440 HLA-DRB1 [+18815bp] C - 4 T vs. G - - >1 (-) 12 (-) <0.05
rs9271018 chr6:32574807 HLA-DRB1 [+17182bp] C - 4 T vs. C 0.417 (T) 0.2 (T) >1 (-) 43 (-) <0.05
rs9270914 chr6:32572249 HLA-DRB1 [+14624bp] C - 4 A vs. T 0.367 (A) 0.192 (A) >1 (-) 34 (-) <0.05
rs9271020 chr6:32574840 HLA-DRB1 [+17215bp] C - 4 T vs. G 0.442 (T) 0.217 (T) >1 (-) 40 (-) <0.05
rs9270857 chr6:32570849 HLA-DRB1 [+13224bp] C - 4 A vs. G 0.367 (G) 0.192 (G) <1 (-) 0 (-) <0.05
rs9270858 chr6:32570859 HLA-DRB1 [+13234bp] C - 4 T vs. C 0.35 (C) 0.208 (C) <1 (-) 0 (-) <0.05
rs9271007 chr6:32574624 HLA-DRB1 [+16999bp] C - 4 A vs. G 0.392 (A) 0.2 (A) >1 (-) 42 (-) <0.05
rs9271008 chr6:32574628 HLA-DRB1 [+17003bp] C - 4 A vs. G 0.392 (G) 0.2 (G) <1 (-) 42 (-) <0.05
rs9270987 chr6:32574127 HLA-DRB1 [+16502bp] C - 5 T vs. C 0.358 (T) 0.183 (T) >1 (-) 24 (-) <0.05
rs9271009 chr6:32574649 HLA-DRB1 [+17024bp] C - 4 A vs. C 0.375 (C) 0.167 (C) <1 (-) 43 (-) <0.05
rs9271010 chr6:32574652 HLA-DRB1 [+17027bp] C - 4 T vs. C 0.375 (T) 0.158 (T) >1 (-) 43 (-) <0.05
rs9271013 chr6:32574703 HLA-DRB1 [+17078bp] C - 4 C vs. G 0.367 (G) 0.183 (G) <1 (-) 41 (-) <0.05
rs9271012 chr6:32574696 HLA-DRB1 [+17071bp] C - 4 A vs. G 0.367 (A) 0.183 (A) >1 (-) 42 (-) <0.05
rs9271106 chr6:32576595 HLA-DRB1 [+18970bp] C - 4 A vs. G 0.433 (G) 0.208 (G) <1 (-) 7 (-) <0.05
rs9270846 chr6:32570577 HLA-DRB1 [+12952bp] C - 4 A vs. T 0.4 (A) 0.192 (A) >1 (-) 0 (-) <0.05
rs9270931 chr6:32572547 HLA-DRB1 [+14922bp] C - 4 A vs. T 0.358 (A) 0.192 (A) >1 (-) 38 (-) <0.05
rs9270922 chr6:32572388 HLA-DRB1 [+14763bp] C - 4 T vs. C 0.367 (T) 0.183 (T) >1 (-) 37 (-) <0.05
rs9270851 chr6:32570776 HLA-DRB1 [+13151bp] C - 4 T vs. C 0.367 (C) 0.2 (C) <1 (-) 0 (-) <0.05
rs3021056 chr6:32655921 HLA-DQB1 [+19761bp] C - 10 T vs. C - - <1 (-) 0 (-) <0.05
rs9271107 chr6:32576604 HLA-DRB1 [+18979bp] C - 4 A vs. T 0.408 (A) 0.2 (A) >1 (-) 6 (-) <0.05

Association studies for this region [+]