PODN, chr1:53527854-53551174 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34107528 chr1:53537396 PODN C - 13 A vs. G 0.033 (A) - >1 (-) 7 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7533010 chr1:53510119 SCP2 C - 13 A vs. T - 0.083 (T) <1 (-) 15 (-) >0.05
rs12562479 chr1:53501646 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs12094847 chr1:53517401 SCP2 [+26bp] C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs11206078 chr1:53511764 SCP2 C - 13 T vs. G 0.058 (T) 0.333 (T) >1 (-) 0 (-) >0.05
rs10888763 chr1:53519270 SCP2 [+1895bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 11 (-) >0.05
rs4926945 chr1:53491455 SCP2 C - 13 A vs. G 0.075 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs60990405 chr1:53509589 SCP2 C - 13 T vs. C 0.025 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs60426629 chr1:53509581 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 16 (-) >0.05
rs6682799 chr1:53507681 SCP2 C - 13 A vs. G 0.025 (A) 0.067 (A) >1 (-) 16 (-) >0.05
rs17367892 chr1:53534524 PODN C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6670842 chr1:53512941 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 1 (-) >0.05
rs6588457 chr1:53510937 SCP2 C - 13 A vs. G 0.033 (G) 0.075 (G) <1 (-) 14 (-) >0.05
rs6588456 chr1:53508707 SCP2 C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs7533000 chr1:53510085 SCP2 C - 13 A vs. G 0.033 (G) 0.092 (G) <1 (-) 15 (-) >0.05
rs56998269 chr1:53494487 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs1871750 chr1:53502765 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs2282340 chr1:53551065 PODN C - 13 A vs. G 0.033 (A) 0.233 (A) >1 (-) 0 (-) >0.05
rs7542983 chr1:53509852 SCP2 C - 13 C vs. G - - >1 (-) 15 (-) >0.05
rs72903198 chr1:53505807 SCP2 C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs7520302 chr1:53506250 SCP2 C - 13 A vs. G 0.017 (G) - <1 (-) 16 (-) >0.05
rs7535299 chr1:53509949 SCP2 C - 13 T vs. G - - <1 (-) 15 (-) >0.05
rs72903196 chr1:53505490 SCP2 C - 13 A vs. G 0.033 (G) 0.083 (G) <1 (-) 16 (-) >0.05
rs72903191 chr1:53504307 SCP2 C - 13 A vs. G 0.025 (A) 0.075 (A) >1 (-) 16 (-) >0.05
rs72903194 chr1:53505358 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 16 (-) >0.05
rs17107717 chr1:53503996 SCP2 C - 13 A vs. C 0.033 (A) 0.108 (A) >1 (-) 16 (-) >0.05
rs9662321 chr1:53503428 SCP2 C - 13 A vs. G 0.033 (G) 0.075 (G) <1 (-) 17 (-) >0.05
rs61504843 chr1:53494225 SCP2 C - 13 A vs. G 0.067 (A) - >1 (-) 0 (-) >0.05
rs60926139 chr1:53494345 SCP2 C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs56978223 chr1:53491839 SCP2 C - 13 A vs. C 0.067 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs140905772 chr1:53577075 SLC1A7 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs3766763 chr1:53514728 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 2 (-) >0.05
rs59335351 chr1:53511507 SCP2 C - 13 A vs. G 0.033 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs74085596 chr1:53575945 SLC1A7 C - 10 T vs. C - - <1 (-) 7 (-) >0.05
rs75448253 chr1:53512354 SCP2 C - 13 T vs. G 0.033 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs75948848 chr1:53500778 SCP2 C - 13 A vs. G - - <1 (-) 15 (-) >0.05
rs922682 chr1:53577701 SLC1A7 C - 11 T vs. C 0.0 (C) 0.0 (C) >1 (-) 0 (-) >0.05
rs80077192 chr1:53500537 SCP2 C - 13 A vs. G - - >1 (-) 15 (-) >0.05
rs12567821 chr1:53512914 SCP2 C - 13 A vs. G 0.025 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs2170301 chr1:53505103 SCP2 C - 13 A vs. G 0.092 (A) 0.392 (A) >1 (-) 0 (-) >0.05
rs72903185 chr1:53502905 SCP2 C - 13 A vs. T 0.033 (A) 0.1 (A) >1 (-) 16 (-) >0.05
rs17107708 chr1:53502884 SCP2 C - 13 C vs. G 0.033 (G) 0.125 (G) <1 (-) 17 (-) >0.05
rs74085598 chr1:53576221 SLC1A7 C - 10 T vs. G - 0.05 (T) >1 (-) 7 (-) >0.05
rs1769289 chr1:53574123 SLC1A7 C - 11 T vs. C 0.0 (C) 0.0 (C) >1 (-) 0 (-) >0.05
rs6673465 chr1:53499822 SCP2 C - 13 A vs. G 0.025 (A) 0.075 (A) >1 (-) 15 (-) >0.05
rs142282007 chr1:53487884 SCP2 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs11206085 chr1:53527619 PODN [-235bp] C - 13 A vs. T - - <1 (-) 0 (-) >0.05
rs77523182 chr1:53563442 SLC1A7 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs3766780 chr1:53578293 SLC1A7 C - 10 A vs. G - 0.167 (G) >1 (-) 3 (-) >0.05
rs3820200 chr1:53517283 SCP2 C - 13 C vs. G 0.033 (A) 0.292 (G) <1 (-) 0 (-) >0.05
rs7555050 chr1:53489132 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 14 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.