SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6588459 chr1:53511094 SCP2 C - 12 T vs. C 0.058 (T) 0.117 (T) >1 (-) 3 (-) >0.05
rs6588458 chr1:53510975 SCP2 C - 13 A vs. G 0.092 (A) 0.392 (A) >1 (-) 0 (-) >0.05
rs6421491 chr1:53511321 SCP2 C - 13 A vs. G 0.058 (G) 0.1 (G) <1 (-) 7 (-) >0.05
rs7533010 chr1:53510119 SCP2 C - 13 A vs. T - 0.083 (T) <1 (-) 15 (-) >0.05
rs79840136 chr1:53439412 SCP2 C - 10 A vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs12562479 chr1:53501646 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs57619703 chr1:53433966 SCP2 C - 13 A vs. G 0.025 (A) 0.225 (A) >1 (-) 0 (-) >0.05
rs59677561 chr1:53433865 SCP2 C - 13 T vs. C 0.025 (C) 0.217 (C) <1 (-) 0 (-) >0.05
rs12094847 chr1:53517401 SCP2 [+26bp] C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs11206078 chr1:53511764 SCP2 C - 13 T vs. G 0.058 (T) 0.333 (T) >1 (-) 0 (-) >0.05
rs10888763 chr1:53519270 SCP2 [+1895bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 11 (-) >0.05
rs113269162 chr1:53433705 SCP2 C - 13 T vs. C 0.025 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs4926945 chr1:53491455 SCP2 C - 13 A vs. G 0.075 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs12124402 chr1:53471293 SCP2 C - 13 T vs. C - - >1 (-) 33 (-) >0.05
rs60990405 chr1:53509589 SCP2 C - 13 T vs. C 0.025 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs60426629 chr1:53509581 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 16 (-) >0.05
rs11206058 chr1:53448953 SCP2 C - 13 A vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs6682799 chr1:53507681 SCP2 C - 13 A vs. G 0.025 (A) 0.067 (A) >1 (-) 16 (-) >0.05
rs17367892 chr1:53534524 PODN C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6670842 chr1:53512941 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 1 (-) >0.05
rs6588457 chr1:53510937 SCP2 C - 13 A vs. G 0.033 (G) 0.075 (G) <1 (-) 14 (-) >0.05
rs6588456 chr1:53508707 SCP2 C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs7533000 chr1:53510085 SCP2 C - 13 A vs. G 0.033 (G) 0.092 (G) <1 (-) 15 (-) >0.05
rs56998269 chr1:53494487 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs74556932 chr1:53477526 SCP2 C - 9 C vs. G 0.092 (G) - >1 (-) 23 (-) >0.05
rs1871750 chr1:53502765 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs2282340 chr1:53551065 PODN C - 13 A vs. G 0.033 (A) 0.233 (A) >1 (-) 0 (-) >0.05
rs7542983 chr1:53509852 SCP2 C - 13 C vs. G - - >1 (-) 15 (-) >0.05
rs72903198 chr1:53505807 SCP2 C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs7520302 chr1:53506250 SCP2 C - 13 A vs. G 0.017 (G) - <1 (-) 16 (-) >0.05
rs7535299 chr1:53509949 SCP2 C - 13 T vs. G - - <1 (-) 15 (-) >0.05
rs72903196 chr1:53505490 SCP2 C - 13 A vs. G 0.033 (G) 0.083 (G) <1 (-) 16 (-) >0.05
rs150018764 chr1:53433234 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs6657985 chr1:53467578 SCP2 C - 13 T vs. C 0.067 (T) 0.358 (T) >1 (-) 0 (-) >0.05
rs72903191 chr1:53504307 SCP2 C - 13 A vs. G 0.025 (A) 0.075 (A) >1 (-) 16 (-) >0.05
rs72903194 chr1:53505358 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 16 (-) >0.05
rs17107717 chr1:53503996 SCP2 C - 13 A vs. C 0.033 (A) 0.108 (A) >1 (-) 16 (-) >0.05
rs9662321 chr1:53503428 SCP2 C - 13 A vs. G 0.033 (G) 0.075 (G) <1 (-) 17 (-) >0.05
rs78682257 chr1:53409094 SCP2 C - 9 T vs. C - - >1 (-) 19 (-) >0.05
rs61504843 chr1:53494225 SCP2 C - 13 A vs. G 0.067 (A) - >1 (-) 0 (-) >0.05
rs60926139 chr1:53494345 SCP2 C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs111445656 chr1:53432727 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs56978223 chr1:53491839 SCP2 C - 13 A vs. C 0.067 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs7528251 chr1:53453077 SCP2 C - 13 T vs. G 0.092 (G) 0.392 (G) <1 (-) 0 (-) >0.05
rs72899310 chr1:53429003 SCP2 C - 13 T vs. C 0.025 (T) 0.225 (T) >1 (-) 0 (-) >0.05
rs3766763 chr1:53514728 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 2 (-) >0.05
rs59335351 chr1:53511507 SCP2 C - 13 A vs. G 0.033 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs12566030 chr1:53470605 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs6656430 chr1:53427701 SCP2 C - 13 A vs. G - 0.2 (G) <1 (-) 0 (-) >0.05
rs59838368 chr1:53428269 SCP2 C - 13 T vs. C 0.025 (C) 0.225 (C) <1 (-) 0 (-) >0.05

Association studies for this region [+]