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SNCA
[-19139bp]
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MAPT
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TMEM175
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ASH1L
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MCCC1
6.
STK39
[+24494bp]
7.
rs6430538
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BST1
9.
NUCKS1
[+4168bp]
10.
TMEM229B
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LRRK2
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HLA-DQB1
[+30500bp]
14.
rs2414739
15.
BCKDK
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rs9271687, chr6:32592985 (HLA-DQA1 [-2971bp])
View on:
ALSGene
Forest plot for this polymorphism
Append your own data and create meta-analysis
Polymorphism
Location (hg19)
Gene
Allele contrast
Ethnicity
# Studies
# Samples
1000G CEU
1000G CHB+JPT
Meta OR (95%CI)
I2 (95%CI)
Meta P-value
rs9271687
chr6
:
32592985
HLA-DQA1
[-2971bp]
A vs. G
All: C
3
44,247
0.225 (A)
0.142 (A)
1.17 (1.07-1.28)
22 (0-92)
7.21e-04
Association studies for this polymorphism
[-]
[+]
Study
PubMed
Title
[+]
Ethnicity
Population
# Cases
# Controls
Nalls
,
2014
-
Large Scale Meta Analysis of Genome-wide Association Data in Parkinson’s Disease Reveals 6 Novel Risk Loci
[-]
Large Scale Meta Analysis of Genome-...
[+]
C
23andMe.v3 (USA, Europe)
866
32,538
Nalls
,
2014
-
Large Scale Meta Analysis of Genome-wide Association Data in Parkinson’s Disease Reveals 6 Novel Risk Loci
[-]
Large Scale Meta Analysis of Genome-...
[+]
C
UK (IPDGC)
1,705
5,200
Nalls
,
2014
-
Large Scale Meta Analysis of Genome-wide Association Data in Parkinson’s Disease Reveals 6 Novel Risk Loci
[-]
Large Scale Meta Analysis of Genome-...
[+]
C
USA (NGRC)
1,956
1,982
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