Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (Ashkenazi) C UKPDSBB CL 268 (33%) 178 (57%) 60 (12) - - - 70 (9) - 9,631

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2240757 chr17:44250433 KANSL1 C vs. T All: C 11 92,764 0.117 (C) 0.367 (C) 1.13 (1.07-1.21) 0 (0-24) 3.80e-05
rs2696664 chr17:44251698 KANSL1 G vs. A All: C 11 92,764 - - 1.30 (1.24-1.36) 0 (0-60) 6.19e-32
rs79554691 chr17:44255143 KANSL1 G vs. A All: C 9 26,600 0.175 (G) - 0.60 (0.54-0.67) 0 (0-64) 5.86e-20
rs8064802 chr17:44262496 KANSL1 C vs. T All: C 7 21,058 0.367 (C) - 1.21 (1.11-1.31) 15 (0-59) 6.91e-06
rs2732588 chr17:44262950 KANSL1 G vs. A All: C 10 88,826 0.408 (G) 0.117 (G) 1.23 (1.16-1.29) 6 (0-65) 1.07e-14
rs2532240 chr17:44265839 KANSL1 T vs. C All: C 10 88,826 0.458 (T) 0.492 (T) 0.78 (0.75-0.82) 43 (0-73) 6.19e-23
rs2732591 chr17:44266975 KANSL1 A vs. G All: C 7 21,058 0.167 (A) - 0.60 (0.53-0.68) 7 (0-73) 4.05e-14
rs72836333 chr17:44270181 KANSL1 A vs. G All: C 6 19,865 0.4 (A) 0.117 (A) 1.24 (1.13-1.35) 31 (0-72) 2.28e-06
rs75449579 chr17:44270985 KANSL1 A vs. G All: C 8 22,662 0.192 (A) - 0.64 (0.57-0.71) 18 (0-61) 7.58e-17
rs2696466 chr17:44289832 KANSL1 A vs. G All: C 8 22,662 - - 1.40 (1.29-1.51) 27 (0-67) 1.11e-17
rs2469914 chr17:44293939 KANSL1 T vs. G All: C 8 22,662 - - 1.77 (1.55-2.02) 13 (0-55) 4.20e-17
rs2668646 chr17:44296522 KANSL1 T vs. C All: C 7 21,058 - - 1.60 (1.42-1.80) 2 (0-71) 2.98e-14
rs144416125 chr17:44296523 KANSL1 G vs. A All: C 7 21,058 - - 1.60 (1.42-1.81) 2 (0-71) 2.98e-14
rs2696557 chr17:44347218 ARL17B [-4932bp] A vs. C All: C 3 8,333 0.208 (A) - 0.60 (0.50-0.73) 57 (0-88) 2.04e-07
rs2429439 chr17:44348221 ARL17B [-3929bp] A vs. G All: C 3 8,333 - - 1.65 (1.36-1.99) 56 (0-88) 2.00e-07
rs2696555 chr17:44348370 ARL17B [-3780bp] G vs. A All: C 3 8,333 0.217 (G) - 0.61 (0.50-0.73) 56 (0-87) 2.02e-07
rs2732713 chr17:44348593 ARL17B [-3557bp] G vs. A All: C 3 8,333 0.217 (G) - 0.61 (0.51-0.73) 54 (0-87) 1.82e-07
rs2732712 chr17:44348932 ARL17B [-3218bp] G vs. T All: C 3 8,333 0.217 (G) - 0.61 (0.51-0.73) 52 (0-86) 1.69e-07
rs2532330 chr17:44349867 ARL17B [-2283bp] G vs. A All: C 3 8,333 - - 1.58 (1.33-1.87) 44 (0-83) 1.33e-07
rs2532329 chr17:44350090 ARL17B [-2060bp] A vs. G All: C 3 8,333 0.217 (A) - 0.63 (0.53-0.75) 36 (0-80) 1.01e-07
rs2696546 chr17:44350919 ARL17B [-1231bp] C vs. A All: C 3 8,333 0.217 (C) - 0.64 (0.54-0.75) 48 (0-85) 1.47e-07
rs2668617 chr17:44351285 ARL17B [-865bp] A vs. G All: C 3 8,333 - - 1.57 (1.33-1.85) 48 (0-85) 1.54e-07
rs2732708 chr17:44351387 ARL17B [-763bp] T vs. C All: C 3 8,333 0.208 (T) - 0.64 (0.54-0.76) 48 (0-85) 1.57e-07
rs2696542 chr17:44351533 ARL17B [-617bp] G vs. A All: C 3 8,333 0.217 (G) - 0.64 (0.54-0.76) 48 (0-85) 1.56e-07
rs2732706 chr17:44351686 ARL17B [-464bp] T vs. C All: C 3 8,333 0.217 (T) - 0.64 (0.54-0.76) 51 (0-86) 1.66e-07
rs2668622 chr17:44352131 ARL17B [-19bp] T vs. G All: C 3 8,333 0.217 (T) - 0.64 (0.54-0.76) 53 (0-86) 1.77e-07
rs2668623 chr17:44352361 ARL17B C vs. T All: C 3 8,333 - - 1.56 (1.31-1.84) 58 (0-88) 2.74e-07
rs2696537 chr17:44352621 ARL17B G vs. A All: C 3 8,333 0.217 (G) - 0.65 (0.55-0.76) 58 (0-88) 2.69e-07
rs2668624 chr17:44352872 ARL17B G vs. A All: C 3 8,333 0.217 (G) - 0.64 (0.54-0.76) 59 (0-88) 2.98e-07
rs2668625 chr17:44352970 ARL17B A vs. C All: C 3 8,333 0.208 (A) - 0.59 (0.48-0.72) 60 (0-89) 3.32e-07
rs2732704 chr17:44353114 ARL17B C vs. T All: C 3 8,333 0.208 (C) - 0.60 (0.49-0.73) 61 (0-89) 3.38e-07
rs2668626 chr17:44353175 ARL17B C vs. T All: C 3 8,333 0.208 (C) - 0.59 (0.49-0.73) 61 (0-89) 3.43e-07
rs2458217 chr17:44353206 ARL17B C vs. T All: C 3 8,333 0.208 (C) - 0.60 (0.50-0.74) 64 (0-90) 4.40e-07
rs36050210 chr17:44353414 ARL17B A vs. G All: C 3 8,333 - - 1.55 (1.31-1.84) 67 (0-91) 5.98e-07
rs55964807 chr17:44353505 ARL17B C vs. T All: C 3 8,333 - - 1.65 (1.35-2.01) 67 (0-91) 5.97e-07
rs2668627 chr17:44353693 ARL17B C vs. T All: C 3 8,333 0.217 (C) - 0.65 (0.55-0.77) 67 (0-91) 5.66e-07
rs2732702 chr17:44353728 ARL17B G vs. T All: C 3 8,333 0.217 (G) - 0.66 (0.56-0.78) 68 (0-91) 6.16e-07
rs2668628 chr17:44353885 ARL17B A vs. G All: C 3 8,333 0.217 (A) - 0.65 (0.55-0.77) 68 (0-91) 6.33e-07
rs2732701 chr17:44354103 ARL17B G vs. A All: C 3 8,333 0.217 (G) - 0.66 (0.56-0.78) 68 (0-91) 6.18e-07
rs2668629 chr17:44354231 ARL17B A vs. G All: C 3 8,333 - - 1.51 (1.28-1.77) 70 (0-91) 7.53e-07
rs2668630 chr17:44354587 ARL17B G vs. A All: C 3 8,333 0.208 (G) - 0.61 (0.50-0.74) 70 (0-91) 7.59e-07
rs2950690 chr17:44354908 ARL17B C vs. T All: C 3 8,333 - - 1.71 (1.38-2.11) 70 (0-91) 7.95e-07
rs2942178 chr17:44354980 ARL17B A vs. C All: C 3 8,333 0.208 (A) - 0.60 (0.49-0.74) 70 (0-91) 8.14e-07
rs2696535 chr17:44355130 ARL17B A vs. G All: C 3 8,333 - - 1.59 (1.32-1.91) 70 (0-91) 8.10e-07
rs2696534 chr17:44355162 ARL17B A vs. G All: C 3 8,333 - - 1.54 (1.30-1.83) 71 (1-91) 8.00e-07
rs2696533 chr17:44355343 ARL17B C vs. T All: C 3 8,333 0.192 (C) - 0.67 (0.57-0.79) 73 (8-92) 1.20e-06
rs2696532 chr17:44355602 ARL17B G vs. A All: C 3 8,333 0.217 (G) - 0.67 (0.56-0.79) 74 (12-92) 1.37e-06
rs2552462 (chr17:44708736) chr17:44491152 intergenic A vs. T All: C 10 31,764 - - 1.55 (1.39-1.73) 35 (0-69) 2.78e-15
rs199460 chr17:44764775 NSF A vs. C All: C 15 108,990 - - 1.34 (1.26-1.43) 35 (0-65) 7.10e-21
rs62074079 (chr17:44764981) chr17:44547284 LRRC37A2 [-41593bp] C vs. G All: C 15 108,990 - - 1.46 (1.37-1.56) 11 (0-48) 1.61e-33