Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (PROGENI-GenePD) C UKPDSBB CL 828 (40%) 852 (60%) 62 (11) - - - 55 (13) - 9,762

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11649768 chr17:7421871 POLR2A [+3938bp] A vs. G All: C 15 108,990 - - 0.93 (0.90-0.96) 0 (0-24) 8.61e-06
rs8081619 chr17:7423766 POLR2A [+5833bp] T vs. C All: C 15 108,990 - - 0.93 (0.90-0.96) 0 (0-25) 5.82e-06
rs10852890 chr17:7424747 POLR2A [+6814bp] A vs. G All: C 15 108,990 - 0.483 (G) 0.93 (0.90-0.96) 0 (0-28) 8.82e-06
rs11078692 chr17:7426065 POLR2A [+8132bp] C vs. T All: C 15 108,990 0.417 (C) 0.492 (T) 1.08 (1.05-1.12) 0 (0-25) 5.10e-06
rs60915639 chr17:7427568 POLR2A [+9635bp] G vs. T All: C 15 108,990 - - 0.93 (0.89-0.96) 0 (0-27) 5.55e-06
rs7218694 chr17:7429319 POLR2A [+11386bp] A vs. C All: C 15 108,990 0.392 (A) 0.483 (A) 1.08 (1.05-1.12) 0 (0-31) 2.76e-06
rs11658305 chr17:7429321 POLR2A [+11388bp] A vs. C All: C 15 108,990 0.4 (A) 0.483 (C) 1.09 (1.05-1.12) 0 (0-34) 2.48e-06
rs6503034 chr17:7430702 POLR2A [+12769bp] T vs. C All: C 15 108,990 - - 0.92 (0.89-0.95) 0 (0-22) 2.94e-06
rs9899741 chr17:7431516 POLR2A [+13583bp] T vs. C All: C 15 108,990 - - 0.92 (0.89-0.96) 0 (0-25) 3.73e-06
rs9907045 chr17:7432369 POLR2A [+14436bp] C vs. T All: C 15 108,990 0.408 (C) 0.492 (C) 1.08 (1.05-1.12) 0 (0-24) 4.03e-06
rs7210659 chr17:7433459 POLR2A [+15526bp] G vs. A All: C 15 108,990 0.4 (G) 0.492 (G) 1.08 (1.05-1.12) 0 (0-23) 3.92e-06
rs8073584 chr17:7434818 POLR2A [+16885bp] G vs. T All: C 15 108,990 0.408 (G) 0.483 (T) 1.09 (1.06-1.13) 0 (0-18) 9.33e-07
rs8073937 chr17:7435040 POLR2A [+17107bp] A vs. G All: C 15 108,990 - - 0.92 (0.89-0.95) 0 (0-38) 1.84e-06
rs11654632 chr17:7437146 TNFSF12 [-15062bp] T vs. C All: C 15 108,990 - - 0.91 (0.88-0.95) 0 (0-12) 4.61e-07
rs11654638 chr17:7437181 TNFSF12 [-15027bp] C vs. T All: C 15 108,990 0.458 (C) 0.467 (T) 1.10 (1.06-1.14) 0 (0-19) 5.56e-07
rs62059792 chr17:7437665 TNFSF12 [-14543bp] G vs. A All: C 15 108,990 0.242 (G) 0.017 (G) 1.09 (1.05-1.14) 32 (0-63) 5.01e-05
rs7502669 chr17:7437958 TNFSF12 [-14250bp] G vs. A All: C 15 108,990 - - 0.93 (0.90-0.96) 0 (0-32) 6.85e-05
rs6503037 chr17:7438050 TNFSF12 [-14158bp] G vs. A All: C 15 108,990 - - 1.09 (1.04-1.13) 0 (0-41) 5.87e-05
rs62059793 chr17:7438687 TNFSF12 [-13521bp] G vs. A All: C 15 108,990 0.233 (G) - 0.93 (0.89-0.97) 0 (0-50) 3.43e-04
rs112958256 chr17:7438864 TNFSF12 [-13344bp] C vs. T All: C 15 108,990 - - 0.90 (0.85-0.95) 6 (0-56) 5.93e-05
rs62059794 chr17:7439270 TNFSF12 [-12938bp] A vs. G All: C 15 108,990 0.1 (A) 0.025 (A) 1.11 (1.06-1.17) 1 (0-54) 5.60e-05
rs9900496 chr17:7439739 TNFSF12 [-12469bp] T vs. C All: C 15 108,990 - - 0.93 (0.90-0.97) 0 (0-37) 6.53e-05
rs75560110 chr17:7439841 TNFSF12 [-12367bp] T vs. C All: C 15 108,990 - - 0.90 (0.86-0.95) 0 (0-53) 6.49e-05
rs78009957 chr17:7440111 TNFSF12 [-12097bp] C vs. T All: C 15 108,990 0.125 (C) - 1.11 (1.05-1.17) 0 (0-53) 6.50e-05
rs72827540 chr17:7441757 TNFSF12 [-10451bp] A vs. G All: C 15 108,990 0.125 (A) 0.167 (A) 1.11 (1.05-1.17) 0 (0-53) 5.97e-05
rs60855753 chr17:7441776 TNFSF12 [-10432bp] T vs. G All: C 15 108,990 0.125 (T) 0.167 (T) 1.11 (1.05-1.17) 0 (0-53) 5.97e-05
rs61416196 chr17:7443740 TNFSF12 [-8468bp] G vs. A All: C 15 108,990 - - 0.90 (0.86-0.95) 0 (0-53) 6.25e-05
rs28583655 chr17:7444206 TNFSF12 [-8002bp] G vs. A All: C 15 108,990 - - 0.90 (0.86-0.95) 0 (0-52) 5.89e-05
rs9912001 chr17:7445372 TNFSF12 [-6836bp] T vs. C All: C 15 108,990 0.35 (T) 0.375 (C) 1.07 (1.03-1.11) 0 (0-39) 9.73e-05
rs62059799 chr17:7445509 TNFSF12 [-6699bp] C vs. T All: C 15 108,990 - - 0.90 (0.86-0.95) 0 (0-52) 6.84e-05
rs9892297 chr17:7446027 TNFSF12 [-6181bp] G vs. A All: C 15 108,990 0.35 (G) 0.375 (A) 1.07 (1.03-1.11) 0 (0-40) 8.83e-05
rs78002826 chr17:7447636 TNFSF12 [-4572bp] T vs. C All: C 15 108,990 0.133 (T) 0.167 (T) 1.11 (1.05-1.16) 0 (0-52) 7.04e-05
rs9899326 chr17:7447764 TNFSF12 [-4444bp] A vs. G All: C 15 108,990 0.133 (A) 0.15 (A) 1.11 (1.05-1.16) 0 (0-52) 7.04e-05
rs9907930 chr17:7447854 TNFSF12 [-4354bp] T vs. G All: C 15 108,990 - - 0.90 (0.86-0.95) 0 (0-52) 6.72e-05
rs62059800 chr17:7448573 TNFSF12 [-3635bp] G vs. A All: C 15 108,990 - - 0.90 (0.86-0.95) 0 (0-52) 6.35e-05
rs28723678 chr17:7448642 TNFSF12 [-3566bp] C vs. T All: C 15 108,990 - - 0.91 (0.86-0.95) 0 (0-52) 7.42e-05
rs77711855 chr17:7452542 TNFSF12 T vs. C All: C 15 108,990 0.133 (T) - 1.11 (1.05-1.16) 0 (0-51) 7.18e-05
rs6608 chr17:7464413 TNFSF12 T vs. C All: C 15 108,990 0.225 (T) 0.067 (T) 1.09 (1.04-1.13) 0 (0-53) 6.73e-05
rs11654859 chr17:7465339 SENP3 T vs. C All: C 15 108,990 0.225 (T) - 1.09 (1.05-1.14) 0 (0-53) 4.67e-05
rs4542712 chr17:7469327 SENP3 C vs. T All: C 15 108,990 0.233 (C) 0.208 (C) 1.09 (1.04-1.13) 0 (0-52) 7.49e-05
rs9901673 chr17:7484101 CD68 A vs. C All: C 15 108,990 0.233 (A) 0.217 (A) 1.09 (1.04-1.13) 0 (0-50) 9.16e-05
rs62059826 chr17:7485583 CD68 [+154bp] T vs. C All: C 15 108,990 0.233 (T) 0.225 (T) 1.09 (1.05-1.14) 2 (0-55) 4.63e-05
rs10852891 chr17:7490810 MPDU1 A vs. G All: C 15 108,990 0.233 (A) 0.225 (A) 1.08 (1.04-1.13) 0 (0-49) 1.11e-04
rs58614441 chr17:7508239 FXR2 T vs. C All: C 15 108,990 - - 0.92 (0.88-0.96) 30 (0-62) 7.86e-05
rs11655488 chr17:7508641 FXR2 G vs. A All: C 15 108,990 - - 0.93 (0.90-0.97) 22 (0-58) 1.54e-04
rs858519 chr17:7531965 SHBG C vs. T All: C 15 108,990 - - 0.94 (0.91-0.97) 0 (0-50) 8.93e-05
rs858518 chr17:7533025 SHBG G vs. A All: C 15 108,990 0.45 (G) 0.317 (G) 1.08 (1.05-1.12) 0 (0-52) 3.88e-06
rs727428 chr17:7537792 SHBG [+1092bp] T vs. C All: C 15 108,990 0.442 (T) 0.35 (C) 1.07 (1.03-1.10) 0 (0-51) 1.78e-04
rs7222810 chr17:8038099 PER1 [-5691bp] A vs. G All: C 15 108,990 0.375 (A) 0.083 (A) 0.94 (0.91-0.97) 0 (0-49) 2.13e-04
rs10462024 chr17:8051639 PER1 G vs. A All: C 15 108,990 0.392 (G) 0.142 (G) 0.94 (0.91-0.97) 0 (0-52) 9.93e-05