Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (CHARGE-FHS) C UKPDSBB PO 60 (42%) 3889 (55%) 76 (11) - - - 64 (12) - 9,223

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7225002 chr17:44189067 KANSL1 G vs. A All: C 14 103,235 0.467 (G) 0.467 (A) 0.86 (0.83-0.88) 23 (0-59) 2.21e-20
rs56807059 chr17:44189270 KANSL1 C vs. A All: C 14 103,235 0.4 (C) 0.1 (C) 1.11 (1.07-1.15) 0 (0-33) 1.87e-09
rs11653367 chr17:44191483 KANSL1 G vs. A All: C 13 97,715 0.375 (G) 0.008 (G) 1.12 (1.07-1.16) 0 (0-43) 7.47e-08
rs34517924 chr17:44193713 KANSL1 G vs. A All: C 13 97,715 - - 0.90 (0.86-0.95) 0 (0-26) 9.66e-05
rs72628328 chr17:44215859 KANSL1 A vs. G All: C 11 92,764 - 0.367 (G) 0.90 (0.85-0.95) 0 (0-24) 9.55e-05
rs1406072 chr17:44216322 KANSL1 A vs. C All: C 11 92,764 0.117 (A) 0.367 (A) 1.12 (1.06-1.18) 0 (0-25) 9.18e-05
rs72628329 chr17:44225798 KANSL1 C vs. T All: C 11 92,764 0.117 (C) 0.367 (C) 1.12 (1.06-1.19) 0 (0-26) 5.90e-05
rs1558247 chr17:44226817 KANSL1 A vs. G All: C 9 26,600 0.175 (A) - 0.61 (0.55-0.68) 0 (0-61) 2.12e-20
rs56147261 chr17:44228894 KANSL1 T vs. C All: C 11 92,764 - 0.367 (C) 0.88 (0.83-0.94) 0 (0-22) 5.28e-05
rs60988411 chr17:44229559 KANSL1 C vs. T All: C 11 92,764 - 0.367 (T) 0.89 (0.84-0.94) 0 (0-20) 5.49e-05
rs59049733 chr17:44237744 KANSL1 C vs. A All: C 11 92,764 0.117 (C) 0.383 (C) 1.12 (1.06-1.19) 0 (0-21) 5.96e-05
rs62060887 chr17:44242759 KANSL1 C vs. T All: C 9 26,600 - - 1.73 (1.54-1.94) 0 (0-61) 2.18e-20
rs2532281 chr17:44245171 KANSL1 T vs. G All: C 11 92,764 0.217 (T) - 0.71 (0.67-0.75) 0 (0-58) 8.73e-32
rs2532280 chr17:44245359 KANSL1 A vs. G All: C 11 92,764 0.217 (A) - 0.73 (0.69-0.77) 0 (0-58) 5.02e-32
rs2696658 chr17:44245766 KANSL1 A vs. G All: C 11 92,764 0.217 (A) - 0.78 (0.74-0.81) 0 (0-59) 6.38e-32
rs2532278 chr17:44246405 KANSL1 A vs. C All: C 11 92,764 0.217 (A) - 0.78 (0.75-0.81) 0 (0-60) 6.15e-32
rs2532277 chr17:44246527 KANSL1 C vs. T All: C 11 92,764 0.217 (C) - 0.73 (0.69-0.77) 0 (0-57) 7.75e-32
rs2532276 chr17:44246624 KANSL1 A vs. C All: C 11 92,764 0.217 (A) - 0.78 (0.74-0.81) 0 (0-60) 6.53e-32
rs2532275 chr17:44246997 KANSL1 A vs. G All: C 11 92,764 0.217 (A) - 0.78 (0.75-0.81) 0 (0-59) 6.61e-32
rs2240759 chr17:44247415 KANSL1 T vs. C All: C 11 92,764 0.117 (T) 0.367 (T) 1.13 (1.07-1.20) 0 (0-19) 4.13e-05
rs62060895 chr17:44250236 KANSL1 G vs. T All: C 11 92,764 0.208 (G) - 0.71 (0.67-0.75) 0 (0-57) 8.06e-32
rs2240757 chr17:44250433 KANSL1 C vs. T All: C 11 92,764 0.117 (C) 0.367 (C) 1.13 (1.07-1.21) 0 (0-24) 3.80e-05
rs2696664 chr17:44251698 KANSL1 G vs. A All: C 11 92,764 - - 1.30 (1.24-1.36) 0 (0-60) 6.19e-32
rs79554691 chr17:44255143 KANSL1 G vs. A All: C 9 26,600 0.175 (G) - 0.60 (0.54-0.67) 0 (0-64) 5.86e-20
rs8064802 chr17:44262496 KANSL1 C vs. T All: C 7 21,058 0.367 (C) - 1.21 (1.11-1.31) 15 (0-59) 6.91e-06
rs2732588 chr17:44262950 KANSL1 G vs. A All: C 10 88,826 0.408 (G) 0.117 (G) 1.23 (1.16-1.29) 6 (0-65) 1.07e-14
rs2532240 chr17:44265839 KANSL1 T vs. C All: C 10 88,826 0.458 (T) 0.492 (T) 0.78 (0.75-0.82) 43 (0-73) 6.19e-23
rs2732591 chr17:44266975 KANSL1 A vs. G All: C 7 21,058 0.167 (A) - 0.60 (0.53-0.68) 7 (0-73) 4.05e-14
rs72836333 chr17:44270181 KANSL1 A vs. G All: C 6 19,865 0.4 (A) 0.117 (A) 1.24 (1.13-1.35) 31 (0-72) 2.28e-06
rs62060948 chr17:44270659 KANSL1 A vs. G All: C 5 19,419 0.383 (A) - 1.23 (1.12-1.35) 0 (0-45) 1.78e-05
rs75449579 chr17:44270985 KANSL1 A vs. G All: C 8 22,662 0.192 (A) - 0.64 (0.57-0.71) 18 (0-61) 7.58e-17
rs2696466 chr17:44289832 KANSL1 A vs. G All: C 8 22,662 - - 1.40 (1.29-1.51) 27 (0-67) 1.11e-17
rs2469914 chr17:44293939 KANSL1 T vs. G All: C 8 22,662 - - 1.77 (1.55-2.02) 13 (0-55) 4.20e-17
rs2668646 chr17:44296522 KANSL1 T vs. C All: C 7 21,058 - - 1.60 (1.42-1.80) 2 (0-71) 2.98e-14
rs144416125 chr17:44296523 KANSL1 G vs. A All: C 7 21,058 - - 1.60 (1.42-1.81) 2 (0-71) 2.98e-14
rs2696557 chr17:44347218 ARL17B [-4932bp] A vs. C All: C 3 8,333 0.208 (A) - 0.60 (0.50-0.73) 57 (0-88) 2.04e-07
rs2429439 chr17:44348221 ARL17B [-3929bp] A vs. G All: C 3 8,333 - - 1.65 (1.36-1.99) 56 (0-88) 2.00e-07
rs2696555 chr17:44348370 ARL17B [-3780bp] G vs. A All: C 3 8,333 0.217 (G) - 0.61 (0.50-0.73) 56 (0-87) 2.02e-07
rs2732713 chr17:44348593 ARL17B [-3557bp] G vs. A All: C 3 8,333 0.217 (G) - 0.61 (0.51-0.73) 54 (0-87) 1.82e-07
rs2732712 chr17:44348932 ARL17B [-3218bp] G vs. T All: C 3 8,333 0.217 (G) - 0.61 (0.51-0.73) 52 (0-86) 1.69e-07
rs2532330 chr17:44349867 ARL17B [-2283bp] G vs. A All: C 3 8,333 - - 1.58 (1.33-1.87) 44 (0-83) 1.33e-07
rs2532329 chr17:44350090 ARL17B [-2060bp] A vs. G All: C 3 8,333 0.217 (A) - 0.63 (0.53-0.75) 36 (0-80) 1.01e-07
rs2696546 chr17:44350919 ARL17B [-1231bp] C vs. A All: C 3 8,333 0.217 (C) - 0.64 (0.54-0.75) 48 (0-85) 1.47e-07
rs2668617 chr17:44351285 ARL17B [-865bp] A vs. G All: C 3 8,333 - - 1.57 (1.33-1.85) 48 (0-85) 1.54e-07
rs2732708 chr17:44351387 ARL17B [-763bp] T vs. C All: C 3 8,333 0.208 (T) - 0.64 (0.54-0.76) 48 (0-85) 1.57e-07
rs2696542 chr17:44351533 ARL17B [-617bp] G vs. A All: C 3 8,333 0.217 (G) - 0.64 (0.54-0.76) 48 (0-85) 1.56e-07
rs2732706 chr17:44351686 ARL17B [-464bp] T vs. C All: C 3 8,333 0.217 (T) - 0.64 (0.54-0.76) 51 (0-86) 1.66e-07
rs2668622 chr17:44352131 ARL17B [-19bp] T vs. G All: C 3 8,333 0.217 (T) - 0.64 (0.54-0.76) 53 (0-86) 1.77e-07
rs2668623 chr17:44352361 ARL17B C vs. T All: C 3 8,333 - - 1.56 (1.31-1.84) 58 (0-88) 2.74e-07
rs2696537 chr17:44352621 ARL17B G vs. A All: C 3 8,333 0.217 (G) - 0.65 (0.55-0.76) 58 (0-88) 2.69e-07