Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (IPDGC-deCODE) C UKPDSBB CL 604 (48%) 4916 (57%) 62 (12) - - - 80 (8) - 9,406

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9922304 chr16:31605067 intergenic C vs. T All: C 15 108,990 0.067 (C) 0.275 (C) 0.92 (0.86-0.98) 0 (0-35) 0.014
rs61518410 chr16:31610882 intergenic T vs. C All: C 15 108,990 0.075 (T) 0.275 (T) 0.92 (0.85-0.98) 0 (0-38) 0.012
rs11865800 chr16:31613277 intergenic T vs. C All: C 15 108,990 0.075 (T) 0.283 (T) 0.92 (0.85-0.98) 0 (0-38) 0.012
rs11648013 chr16:49722411 ZNF423 G vs. A All: C 15 108,990 0.283 (G) 0.458 (G) 1.07 (1.03-1.11) 0 (-) 2.14e-04
rs2356619 chr16:49729630 ZNF423 G vs. A All: C 15 108,990 0.292 (G) 0.5 (G) 1.08 (1.04-1.12) 0 (0-9) 9.02e-05
rs17271951 chr16:52538040 TOX3 C vs. T All: C 15 108,990 0.25 (C) 0.225 (C) 1.08 (1.04-1.12) 0 (0-54) 3.08e-05
rs35668161 chr16:52538825 TOX3 C vs. A All: C 15 108,990 - - 0.92 (0.89-0.96) 1 (0-54) 2.96e-05
rs12600239 chr16:52538900 TOX3 C vs. T All: C 15 108,990 - - 0.93 (0.89-0.96) 0 (0-52) 4.24e-05
rs7500427 chr16:52545277 TOX3 G vs. A All: C 15 108,990 - - 0.92 (0.89-0.96) 0 (0-51) 3.25e-05
rs9936081 chr16:52549646 TOX3 A vs. G All: C 15 108,990 0.25 (A) 0.458 (A) 1.08 (1.04-1.12) 0 (0-52) 3.56e-05
rs1345388 chr16:52556293 TOX3 C vs. T All: C 15 108,990 0.242 (C) 0.45 (C) 1.08 (1.04-1.12) 0 (0-51) 3.06e-05
rs12918816 chr16:52560213 TOX3 A vs. G All: C 15 108,990 0.25 (A) 0.475 (A) 1.08 (1.04-1.12) 0 (0-50) 2.11e-05
rs9921569 chr16:52572029 TOX3 C vs. T All: C 15 108,990 0.258 (C) 0.475 (C) 1.08 (1.04-1.12) 0 (0-49) 2.25e-05
rs35850695 chr16:52574343 TOX3 A vs. G All: C 15 108,990 0.258 (A) 0.258 (A) 1.08 (1.05-1.12) 0 (0-48) 1.47e-05
rs4784223 chr16:52575907 TOX3 G vs. A All: C 15 108,990 0.258 (G) 0.475 (G) 1.08 (1.04-1.12) 0 (0-49) 2.25e-05
rs8045285 chr16:52579986 TOX3 G vs. A All: C 15 108,990 0.208 (G) 0.475 (G) 1.08 (1.04-1.12) 0 (0-42) 3.40e-05
rs3095602 chr16:52580500 TOX3 A vs. G All: C 15 108,990 0.242 (A) - 1.08 (1.04-1.12) 0 (0-44) 2.90e-05
rs12930156 chr16:52581424 TOX3 T vs. C All: C 15 108,990 0.242 (T) 0.367 (C) 1.08 (1.04-1.12) 0 (0-46) 1.92e-05
rs28463809 chr16:52583054 TOX3 [+1340bp] T vs. G All: C 15 108,990 0.242 (T) 0.367 (G) 1.08 (1.04-1.11) 0 (0-43) 4.65e-05
rs4784226 chr16:52583143 TOX3 [+1429bp] T vs. C All: C 15 108,990 0.208 (T) 0.25 (T) 1.10 (1.05-1.14) 0 (0-43) 3.37e-06
rs3095606 chr16:52584173 TOX3 [+2459bp] G vs. A All: C 15 108,990 0.242 (G) 0.367 (A) 1.08 (1.04-1.12) 0 (0-41) 4.20e-05
rs3095607 chr16:52584295 TOX3 [+2581bp] G vs. T All: C 15 108,990 0.242 (G) 0.367 (T) 1.08 (1.04-1.11) 0 (0-43) 4.87e-05
rs3112578 chr16:52585440 TOX3 [+3726bp] C vs. T All: C 15 108,990 0.217 (C) 0.475 (C) 1.09 (1.05-1.13) 0 (0-47) 7.96e-06
rs3803662 chr16:52586341 TOX3 [+4627bp] A vs. G All: C 15 108,990 0.242 (A) 0.367 (G) 1.07 (1.04-1.11) 0 (0-45) 6.70e-05
rs3803661 chr16:52586477 TOX3 [+4763bp] A vs. G All: C 15 108,990 0.242 (A) 0.375 (G) 1.07 (1.04-1.11) 0 (0-45) 6.33e-05
rs4784227 chr16:52599188 TOX3 [+17474bp] T vs. C All: C 15 108,990 0.208 (T) 0.217 (T) 1.09 (1.05-1.13) 0 (0-51) 5.77e-06
rs3104766 chr16:52624535 TOX3 [+42821bp] A vs. C All: C 15 108,990 0.408 (A) 0.183 (C) 1.07 (1.04-1.10) 27 (0-60) 5.06e-05
rs3104767 chr16:52624738 TOX3 [+43024bp] T vs. G All: C 15 108,990 0.4 (T) 0.183 (G) 1.07 (1.04-1.10) 27 (0-61) 5.03e-05
rs3112626 chr16:52625200 TOX3 [+43486bp] G vs. A All: C 15 108,990 0.4 (G) 0.183 (A) 1.07 (1.03-1.10) 26 (0-60) 7.82e-05
rs3112625 chr16:52625552 TOX3 [+43838bp] G vs. A All: C 15 108,990 0.4 (G) 0.183 (A) 1.07 (1.03-1.10) 24 (0-59) 7.91e-05
rs12920540 chr16:52625613 TOX3 [+43899bp] A vs. C All: C 15 108,990 0.383 (A) 0.458 (A) 1.07 (1.03-1.10) 33 (0-64) 9.79e-05
rs3104768 chr16:52626396 TOX3 [+44682bp] A vs. G All: C 15 108,990 0.4 (A) 0.183 (G) 1.07 (1.04-1.10) 28 (0-61) 4.84e-05
rs3112624 chr16:52626551 TOX3 [+44837bp] G vs. A All: C 15 108,990 0.4 (G) 0.183 (A) 1.07 (1.04-1.10) 28 (0-61) 4.84e-05
rs3104769 chr16:52627231 TOX3 [+45517bp] T vs. C All: C 15 108,990 0.4 (T) 0.2 (C) 1.07 (1.04-1.11) 29 (0-62) 3.64e-05
rs3112623 chr16:52627526 TOX3 [+45812bp] G vs. A All: C 15 108,990 0.4 (G) 0.183 (A) 1.07 (1.04-1.10) 28 (0-61) 4.90e-05
rs11860769 chr16:52628537 TOX3 [+46823bp] A vs. G All: C 15 108,990 - - 0.94 (0.91-0.97) 29 (0-62) 4.87e-05
rs11861036 chr16:52628564 TOX3 [+46850bp] C vs. T All: C 15 108,990 0.4 (C) - 1.07 (1.04-1.10) 28 (0-62) 5.01e-05
rs3104772 chr16:52629326 TOX3 [+47612bp] A vs. G All: C 15 108,990 0.4 (A) 0.183 (G) 1.07 (1.04-1.10) 30 (0-62) 4.06e-05
rs3104773 chr16:52629436 TOX3 [+47722bp] A vs. G All: C 15 108,990 0.408 (A) 0.183 (G) 1.07 (1.04-1.10) 29 (0-62) 4.70e-05
rs3112622 chr16:52629503 TOX3 [+47789bp] C vs. T All: C 15 108,990 0.4 (C) 0.183 (T) 1.07 (1.04-1.10) 29 (0-62) 4.71e-05
rs3104774 chr16:52629702 TOX3 [+47988bp] A vs. G All: C 15 108,990 0.4 (A) 0.183 (G) 1.07 (1.04-1.11) 30 (0-62) 3.10e-05
rs3104775 chr16:52629827 TOX3 [+48113bp] A vs. G All: C 15 108,990 0.408 (A) 0.183 (G) 1.07 (1.04-1.10) 29 (0-62) 4.68e-05
rs3112621 chr16:52630349 TOX3 [+48635bp] G vs. A All: C 15 108,990 0.4 (G) 0.183 (A) 1.07 (1.03-1.10) 29 (0-62) 6.39e-05
rs3104776 chr16:52631462 TOX3 [+49748bp] G vs. A All: C 15 108,990 0.408 (G) 0.183 (A) 1.07 (1.03-1.10) 31 (0-63) 5.41e-05
rs3112617 chr16:52631717 intergenic G vs. T All: C 15 108,990 0.4 (G) 0.183 (T) 1.07 (1.03-1.10) 32 (0-63) 5.33e-05
rs3112616 chr16:52631747 intergenic G vs. T All: C 15 108,990 0.383 (G) 0.183 (T) 1.07 (1.03-1.10) 31 (0-63) 5.47e-05
rs11075551 chr16:52631964 intergenic G vs. A All: C 15 108,990 0.4 (G) 0.183 (A) 1.07 (1.03-1.10) 32 (0-64) 5.72e-05
rs3112615 chr16:52632350 intergenic C vs. A All: C 15 108,990 0.4 (C) 0.167 (A) 1.07 (1.03-1.10) 32 (0-64) 5.85e-05
rs3104777 chr16:52632631 intergenic T vs. C All: C 15 108,990 0.4 (T) 0.183 (C) 1.07 (1.03-1.10) 32 (0-64) 5.88e-05
rs45500599 chr16:52632897 intergenic A vs. G All: C 15 108,990 0.4 (A) 0.183 (G) 1.07 (1.03-1.10) 33 (0-64) 5.61e-05