Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
Iceland (IPDGC-deCODE) C UKPDSBB CL 604 (48%) 4916 (57%) 62 (12) - - - 80 (8) - 9,406

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs708773 chr1:226920730 ITPKB C vs. T All: C 15 108,990 0.283 (C) 0.325 (C) 0.92 (0.89-0.95) 6 (0-57) 4.29e-06
rs708775 chr1:226923264 ITPKB A vs. G All: C 15 108,990 0.283 (A) 0.325 (A) 0.92 (0.89-0.95) 5 (0-56) 4.30e-06
rs7525200 chr1:232156584 DISC1 C vs. T All: C 15 108,990 0.033 (C) 0.05 (C) 1.13 (1.00-1.28) 18 (0-55) 0.057
rs78071873 chr1:232158581 DISC1 T vs. C All: C 15 108,990 0.033 (T) - 1.11 (0.99-1.25) 11 (0-49) 0.075
rs77545015 chr1:232160108 DISC1 G vs. C All: C 15 108,990 0.033 (G) 0.05 (G) 1.10 (0.98-1.24) 11 (0-48) 0.098
rs75978425 chr1:232161710 DISC1 G vs. C All: C 15 108,990 0.05 (G) 0.05 (G) 1.07 (0.97-1.18) 0 (0-9) 0.172
rs77016139 chr1:232161711 DISC1 T vs. A All: C 15 108,990 0.05 (T) 0.05 (T) 1.07 (0.97-1.18) 0 (0-8) 0.174
rs6703676 chr1:232344958 intergenic T vs. C All: C 15 108,990 0.425 (T) 0.175 (C) 1.05 (1.02-1.08) 25 (0-60) 0.003
rs7411832 chr1:232349350 intergenic C vs. A All: C 15 108,990 0.45 (C) 0.242 (A) 1.05 (1.02-1.08) 25 (0-60) 0.003
rs7415668 chr1:232349548 intergenic G vs. A All: C 15 108,990 0.45 (G) 0.242 (A) 1.05 (1.02-1.08) 25 (0-60) 0.003
rs7412349 chr1:232349765 intergenic C vs. T All: C 15 108,990 0.45 (C) 0.242 (T) 1.05 (1.02-1.08) 25 (0-60) 0.003
rs10797564 chr1:232350987 intergenic G vs. A All: C 15 108,990 0.45 (G) 0.242 (A) 1.05 (1.02-1.08) 24 (0-59) 0.003
rs12075606 chr1:232363452 intergenic A vs. T All: C 15 108,990 0.092 (A) 0.058 (A) 0.92 (0.87-0.97) 20 (0-56) 0.001
rs28888187 chr1:232366668 intergenic A vs. C All: C 14 105,041 - - 1.13 (1.05-1.22) 9 (0-47) 0.001
rs35186494 chr1:232657647 SIPA1L2 C vs. T All: C 15 108,990 0.108 (C) 0.117 (C) 1.14 (1.09-1.19) 0 (0-47) 2.03e-08
rs2357070 chr1:232658363 SIPA1L2 A vs. G All: C 15 108,990 0.183 (A) 0.333 (G) 1.09 (1.05-1.14) 29 (0-62) 8.01e-06
rs10910548 chr1:232658436 SIPA1L2 G vs. A All: C 15 108,990 0.108 (G) 0.075 (G) 1.14 (1.09-1.20) 0 (0-48) 1.51e-08
rs3902818 chr1:232658704 SIPA1L2 A vs. G All: C 15 108,990 0.108 (A) 0.1 (A) 1.14 (1.09-1.19) 0 (0-49) 1.55e-08
rs7535469 chr1:232659827 SIPA1L2 T vs. C All: C 15 108,990 0.183 (T) 0.342 (C) 1.09 (1.05-1.14) 30 (0-62) 7.67e-06
rs2182431 chr1:232660040 SIPA1L2 G vs. A All: C 15 108,990 0.108 (G) 0.1 (G) 1.14 (1.09-1.19) 0 (0-49) 1.38e-08
rs10797575 chr1:232661229 SIPA1L2 T vs. C All: C 15 108,990 0.183 (T) 0.4 (C) 1.10 (1.05-1.14) 30 (0-62) 5.21e-06
rs10797576 chr1:232664611 SIPA1L2 T vs. C All: C 21 120,238 0.092 (T) 0.092 (T) 1.13 (1.09-1.18) 0 (0-41) 1.76e-10
rs6656109 chr1:232665165 SIPA1L2 C vs. T All: C 15 108,990 0.175 (C) 0.325 (T) 1.09 (1.05-1.14) 28 (0-61) 5.41e-06
rs11589828 chr1:232669272 SIPA1L2 A vs. T All: C 15 108,990 0.108 (A) 0.117 (A) 1.14 (1.09-1.19) 0 (0-50) 2.11e-08
rs1326293 chr1:232669682 SIPA1L2 T vs. G All: C 15 108,990 0.1 (T) 0.117 (T) 1.14 (1.09-1.19) 0 (0-48) 2.27e-08
rs6424234 chr1:232670114 SIPA1L2 C vs. T All: C 15 108,990 0.183 (C) 0.325 (T) 1.09 (1.05-1.14) 27 (0-61) 6.29e-06
rs7532227 chr1:232670146 SIPA1L2 A vs. G All: C 15 108,990 0.183 (A) 0.35 (G) 1.09 (1.05-1.14) 27 (0-61) 5.93e-06
rs3007316 chr1:246873394 SCCPDH [-13955bp] T vs. C All: C 15 108,990 0.358 (T) 0.267 (T) 1.07 (1.04-1.11) 0 (0-43) 4.87e-05
rs3007317 chr1:246875832 SCCPDH [-11517bp] T vs. G All: C 15 108,990 - - 0.94 (0.91-0.97) 0 (0-46) 4.80e-04
rs13402438 chr2:26191490 KIF3C A vs. G All: C 15 108,990 0.325 (A) 0.067 (A) 1.08 (1.04-1.12) 13 (0-51) 2.78e-05
rs13003310 chr2:26200972 KIF3C T vs. G All: C 15 108,990 0.333 (T) 0.042 (T) 1.07 (1.03-1.11) 0 (0-46) 3.81e-04
rs12434584 chr2:29918951 ALK C vs. T All: C 14 105,041 - - 1.07 (1.04-1.11) 0 (0-47) 7.52e-05
rs725631 chr2:31781026 intergenic A vs. C All: C 15 108,990 0.283 (A) 0.492 (C) 0.93 (0.90-0.96) 0 (0-47) 3.23e-05
rs12467911 chr2:31782791 intergenic T vs. C All: C 15 108,990 0.217 (T) 0.45 (T) 0.93 (0.90-0.96) 0 (0-45) 3.19e-05
rs2268799 chr2:31803495 intergenic T vs. C All: C 15 108,990 0.225 (T) 0.45 (T) 0.93 (0.90-0.97) 0 (0-28) 5.43e-05
rs522638 chr2:31805675 intergenic A vs. G All: C 15 108,990 0.225 (A) 0.442 (A) 0.93 (0.90-0.96) 0 (0-43) 2.84e-05
rs806645 chr2:31807940 intergenic T vs. C All: C 15 108,990 0.225 (T) 0.45 (T) 0.93 (0.90-0.96) 0 (0-22) 4.35e-05
rs676033 chr2:31808970 intergenic T vs. C All: C 15 108,990 0.217 (T) 0.45 (T) 0.93 (0.90-0.96) 0 (0-41) 2.40e-05
rs633376 chr2:31815191 intergenic T vs. G All: C 15 108,990 0.233 (T) 0.45 (T) 0.93 (0.89-0.96) 0 (0-39) 7.78e-05
rs809364 chr2:31815453 intergenic G vs. A All: C 15 108,990 - - 1.08 (1.04-1.12) 0 (0-48) 4.89e-05
rs646674 chr2:31815844 intergenic G vs. A All: C 15 108,990 - - 1.09 (1.05-1.13) 0 (0-47) 2.44e-05
rs1090846 chr2:31816341 intergenic C vs. T All: C 15 108,990 - - 1.08 (1.04-1.13) 0 (0-45) 2.54e-05
rs669347 chr2:31830912 intergenic T vs. C All: C 15 108,990 0.225 (T) 0.4 (T) 0.93 (0.89-0.96) 0 (0-51) 3.12e-05
rs607294 chr2:31832807 intergenic T vs. C All: C 15 108,990 0.258 (T) 0.458 (T) 0.93 (0.90-0.96) 0 (0-41) 2.94e-05
rs623419 chr2:31834078 intergenic A vs. G All: C 15 108,990 0.225 (A) 0.45 (A) 0.93 (0.90-0.96) 0 (0-40) 3.58e-05
rs655548 chr2:31836658 intergenic A vs. C All: C 15 108,990 0.233 (A) 0.45 (A) 0.93 (0.90-0.97) 0 (0-30) 7.35e-05
rs534999 chr2:31844504 intergenic T vs. C All: C 15 108,990 - 0.492 (C) 1.07 (1.03-1.11) 0 (0-43) 1.70e-04
rs477517 chr2:31848637 intergenic C vs. T All: C 15 108,990 0.242 (C) 0.467 (C) 0.93 (0.89-0.96) 0 (0-47) 1.63e-05
rs660558 chr2:31850035 intergenic A vs. G All: C 15 108,990 - - 1.08 (1.04-1.11) 0 (0-42) 2.87e-05
rs614173 chr2:31853202 intergenic C vs. T All: C 15 108,990 0.233 (C) 0.458 (C) 0.93 (0.90-0.96) 0 (0-41) 1.96e-05