Study: Nalls, 2014

Population Ethnicity Diagnosis Source # Cases (% women) # Controls (% women) AAO (sd) AAO range AAE (sd) AAE range Ctrl age (sd) Ctrl age range # Polymorphisms
USA (IPDGC-NIA) C UKPDSBB CL 937 (40%) 1896 (53%) 58 (13) - - - 63 (10) - 9,622

Polymorphisms in this population [-]

Polymorphism Location (hg19) Gene Allele contrast Ethnicity # Studies # Samples 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11652924 chr17:44182267 KANSL1 C vs. T All: C 14 103,235 - - 0.88 (0.85-0.92) 0 (0-42) 1.49e-12
rs78381082 chr17:44182983 KANSL1 G vs. A All: C 13 97,715 0.2 (G) - 0.63 (0.58-0.68) 10 (0-49) 3.06e-34
rs9904766 chr17:44186952 KANSL1 T vs. C All: C 14 103,235 0.417 (T) 0.117 (T) 1.13 (1.09-1.17) 0 (0-40) 6.37e-12
rs7225002 chr17:44189067 KANSL1 G vs. A All: C 14 103,235 0.467 (G) 0.467 (A) 0.86 (0.83-0.88) 23 (0-59) 2.21e-20
rs56807059 chr17:44189270 KANSL1 C vs. A All: C 14 103,235 0.4 (C) 0.1 (C) 1.11 (1.07-1.15) 0 (0-33) 1.87e-09
rs11653367 chr17:44191483 KANSL1 G vs. A All: C 13 97,715 0.375 (G) 0.008 (G) 1.12 (1.07-1.16) 0 (0-43) 7.47e-08
rs34517924 chr17:44193713 KANSL1 G vs. A All: C 13 97,715 - - 0.90 (0.86-0.95) 0 (0-26) 9.66e-05
rs72628328 chr17:44215859 KANSL1 A vs. G All: C 11 92,764 - 0.367 (G) 0.90 (0.85-0.95) 0 (0-24) 9.55e-05
rs1406072 chr17:44216322 KANSL1 A vs. C All: C 11 92,764 0.117 (A) 0.367 (A) 1.12 (1.06-1.18) 0 (0-25) 9.18e-05
rs72628329 chr17:44225798 KANSL1 C vs. T All: C 11 92,764 0.117 (C) 0.367 (C) 1.12 (1.06-1.19) 0 (0-26) 5.90e-05
rs1558247 chr17:44226817 KANSL1 A vs. G All: C 9 26,600 0.175 (A) - 0.61 (0.55-0.68) 0 (0-61) 2.12e-20
rs56147261 chr17:44228894 KANSL1 T vs. C All: C 11 92,764 - 0.367 (C) 0.88 (0.83-0.94) 0 (0-22) 5.28e-05
rs60988411 chr17:44229559 KANSL1 C vs. T All: C 11 92,764 - 0.367 (T) 0.89 (0.84-0.94) 0 (0-20) 5.49e-05
rs59049733 chr17:44237744 KANSL1 C vs. A All: C 11 92,764 0.117 (C) 0.383 (C) 1.12 (1.06-1.19) 0 (0-21) 5.96e-05
rs62060887 chr17:44242759 KANSL1 C vs. T All: C 9 26,600 - - 1.73 (1.54-1.94) 0 (0-61) 2.18e-20
rs2532281 chr17:44245171 KANSL1 T vs. G All: C 11 92,764 0.217 (T) - 0.71 (0.67-0.75) 0 (0-58) 8.73e-32
rs2532280 chr17:44245359 KANSL1 A vs. G All: C 11 92,764 0.217 (A) - 0.73 (0.69-0.77) 0 (0-58) 5.02e-32
rs2696658 chr17:44245766 KANSL1 A vs. G All: C 11 92,764 0.217 (A) - 0.78 (0.74-0.81) 0 (0-59) 6.38e-32
rs2532278 chr17:44246405 KANSL1 A vs. C All: C 11 92,764 0.217 (A) - 0.78 (0.75-0.81) 0 (0-60) 6.15e-32
rs2532277 chr17:44246527 KANSL1 C vs. T All: C 11 92,764 0.217 (C) - 0.73 (0.69-0.77) 0 (0-57) 7.75e-32
rs2532276 chr17:44246624 KANSL1 A vs. C All: C 11 92,764 0.217 (A) - 0.78 (0.74-0.81) 0 (0-60) 6.53e-32
rs2532275 chr17:44246997 KANSL1 A vs. G All: C 11 92,764 0.217 (A) - 0.78 (0.75-0.81) 0 (0-59) 6.61e-32
rs2240759 chr17:44247415 KANSL1 T vs. C All: C 11 92,764 0.117 (T) 0.367 (T) 1.13 (1.07-1.20) 0 (0-19) 4.13e-05
rs62060895 chr17:44250236 KANSL1 G vs. T All: C 11 92,764 0.208 (G) - 0.71 (0.67-0.75) 0 (0-57) 8.06e-32
rs2240757 chr17:44250433 KANSL1 C vs. T All: C 11 92,764 0.117 (C) 0.367 (C) 1.13 (1.07-1.21) 0 (0-24) 3.80e-05
rs2696664 chr17:44251698 KANSL1 G vs. A All: C 11 92,764 - - 1.30 (1.24-1.36) 0 (0-60) 6.19e-32
rs79554691 chr17:44255143 KANSL1 G vs. A All: C 9 26,600 0.175 (G) - 0.60 (0.54-0.67) 0 (0-64) 5.86e-20
rs8064802 chr17:44262496 KANSL1 C vs. T All: C 7 21,058 0.367 (C) - 1.21 (1.11-1.31) 15 (0-59) 6.91e-06
rs2732588 chr17:44262950 KANSL1 G vs. A All: C 10 88,826 0.408 (G) 0.117 (G) 1.23 (1.16-1.29) 6 (0-65) 1.07e-14
rs2532240 chr17:44265839 KANSL1 T vs. C All: C 10 88,826 0.458 (T) 0.492 (T) 0.78 (0.75-0.82) 43 (0-73) 6.19e-23
rs2732591 chr17:44266975 KANSL1 A vs. G All: C 7 21,058 0.167 (A) - 0.60 (0.53-0.68) 7 (0-73) 4.05e-14
rs72836333 chr17:44270181 KANSL1 A vs. G All: C 6 19,865 0.4 (A) 0.117 (A) 1.24 (1.13-1.35) 31 (0-72) 2.28e-06
rs62060948 chr17:44270659 KANSL1 A vs. G All: C 5 19,419 0.383 (A) - 1.23 (1.12-1.35) 0 (0-45) 1.78e-05
rs75449579 chr17:44270985 KANSL1 A vs. G All: C 8 22,662 0.192 (A) - 0.64 (0.57-0.71) 18 (0-61) 7.58e-17
rs2696466 chr17:44289832 KANSL1 A vs. G All: C 8 22,662 - - 1.40 (1.29-1.51) 27 (0-67) 1.11e-17
rs2469914 chr17:44293939 KANSL1 T vs. G All: C 8 22,662 - - 1.77 (1.55-2.02) 13 (0-55) 4.20e-17
rs2668646 chr17:44296522 KANSL1 T vs. C All: C 7 21,058 - - 1.60 (1.42-1.80) 2 (0-71) 2.98e-14
rs144416125 chr17:44296523 KANSL1 G vs. A All: C 7 21,058 - - 1.60 (1.42-1.81) 2 (0-71) 2.98e-14
rs2552462 (chr17:44708736) chr17:44491152 intergenic A vs. T All: C 10 31,764 - - 1.55 (1.39-1.73) 35 (0-69) 2.78e-15
rs199460 chr17:44764775 NSF A vs. C All: C 15 108,990 - - 1.34 (1.26-1.43) 35 (0-65) 7.10e-21
rs62074079 (chr17:44764981) chr17:44547284 LRRC37A2 [-41593bp] C vs. G All: C 15 108,990 - - 1.46 (1.37-1.56) 11 (0-48) 1.61e-33
rs143572569 chr17:44776843 NSF T vs. C All: C 13 42,826 - - 1.62 (1.47-1.78) 10 (0-49) 7.38e-23
rs200403 chr17:44781143 NSF A vs. C All: C 15 108,990 - - 1.27 (1.21-1.32) 26 (0-60) 2.49e-27
rs116988420 chr17:44782279 NSF C vs. G All: C 15 108,990 - - 1.46 (1.37-1.55) 6 (0-57) 1.40e-34
rs17692129 chr17:44793283 NSF T vs. C All: C 11 94,570 0.317 (T) 0.208 (T) 1.07 (1.03-1.11) 24 (0-62) 1.83e-04
rs199451 chr17:44801784 NSF A vs. G All: C 15 108,990 0.208 (A) - 0.78 (0.75-0.81) 10 (0-48) 5.80e-34
rs35937770 chr17:44808360 NSF A vs. G All: C 11 94,570 0.308 (A) 0.217 (A) 1.08 (1.04-1.12) 24 (0-62) 8.26e-05
rs199447 chr17:44812188 NSF T vs. C All: C 15 108,990 0.208 (T) - 0.78 (0.75-0.81) 12 (0-50) 5.75e-34
rs9912530 chr17:44836302 NSF [+1472bp] T vs. C All: C 15 108,990 0.275 (T) 0.275 (C) 0.81 (0.78-0.84) 23 (0-58) 1.42e-26
rs199530 chr17:44836653 NSF [+1823bp] G vs. A All: C 15 108,990 0.242 (G) 0.275 (A) 0.80 (0.77-0.83) 26 (0-60) 3.86e-29