HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2524059 chr6:31250823 HLA-C [+10916bp] C - 12 C vs. G 0.433 (C) 0.283 (C) >1 (-) 0 (-) >0.05
rs143767978 chr6:31214716 HLA-C [-21810bp] C - 4 T vs. G - - >1 (-) 22 (-) >0.05
rs115699806 chr6:31252031 HLA-C [+12124bp] C - 12 A vs. G 0.067 (G) 0.117 (G) <1 (-) 22 (-) >0.05
rs2844623 chr6:31232543 HLA-C [-3983bp] C - 4 T vs. C 0.183 (T) 0.158 (T) >1 (-) 0 (-) >0.05
rs1130838 chr6:31237124 HLA-C C - 3 T vs. C 0.392 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs114904826 chr6:31264960 HLA-C [+25053bp] C - 11 T vs. C 0.067 (C) 0.117 (C) <1 (-) 19 (-) >0.05
rs114173373 chr6:31245182 HLA-C [+5275bp] C - 12 A vs. G 0.1 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs115031819 chr6:31245180 HLA-C [+5273bp] C - 12 T vs. C 0.1 (C) 0.092 (C) >1 (-) 0 (-) >0.05
chr6:31208999 chr6:31208999 HLA-C [-27527bp] C - 4 T vs. C - - >1 (-) 7 (-) >0.05
rs112833418 chr6:31195459 HCG27 [+23714bp] C - 12 A vs. G 0.108 (A) - <1 (-) 0 (-) >0.05
rs35708511 chr6:31237162 HLA-C C - 3 C vs. G 0.392 (C) 0.25 (C) >1 (-) 0 (-) >0.05
rs2524101 chr6:31235598 HLA-C [-928bp] C - 4 C vs. G 0.192 (C) 0.35 (C) >1 (-) 56 (-) >0.05
rs3869120 chr6:31207884 HLA-C [-28642bp] C - 12 A vs. G 0.042 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs57568041 chr6:31205868 HLA-C [-30658bp] C - 11 A vs. G - - >1 (-) 40 (-) >0.05
rs58164018 chr6:31205888 HLA-C [-30638bp] C - 11 T vs. C - - <1 (-) 40 (-) >0.05
rs9501532 chr6:31201665 HCG27 [+29920bp] C - 12 A vs. C - - <1 (-) 36 (-) >0.05
rs7756999 chr6:31206408 HLA-C [-30118bp] C - 12 T vs. C - - >1 (-) 2 (-) >0.05
chr6:31219451 chr6:31219451 HLA-C [-17075bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs1639112 chr6:31221922 HLA-C [-14604bp] C - 4 T vs. G 0.208 (G) - >1 (-) 39 (-) >0.05
rs58019823 chr6:31241215 HLA-C [+1308bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs73392854 chr6:31249326 HLA-C [+9419bp] C - 12 A vs. G 0.067 (G) 0.033 (G) <1 (-) 25 (-) >0.05
rs118094249 chr6:31255186 HLA-C [+15279bp] C - 6 A vs. C - 0.05 (C) <1 (-) 0 (-) >0.05
rs5010528 chr6:31241032 HLA-C [+1125bp] C - 12 A vs. G 0.1 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs9501530 chr6:31201207 HCG27 [+29462bp] C - 12 A vs. G - - <1 (-) 36 (-) >0.05
rs6927324 chr6:31194764 HCG27 [+23019bp] C - 12 A vs. C 0.2 (C) 0.233 (C) >1 (-) 46 (-) >0.05
rs72863883 chr6:31206445 HLA-C [-30081bp] C - 7 A vs. G - - <1 (-) 24 (-) >0.05
rs67058142 chr6:31241793 HLA-C [+1886bp] C - 12 A vs. G 0.1 (A) - <1 (-) 0 (-) >0.05
rs2524158 chr6:31260318 HLA-C [+20411bp] C - 12 A vs. G 0.483 (G) 0.333 (A) >1 (-) 9 (-) >0.05
rs115120050 chr6:31239912 HLA-C [+5bp] C - 6 T vs. G - - >1 (-) 45 (-) >0.05
rs72502551 chr6:31210429 HLA-C [-26097bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs35419152 chr6:31243313 HLA-C [+3406bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs4416711 chr6:31221039 HLA-C [-15487bp] C - 8 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs73728443 chr6:31208355 HLA-C [-28171bp] C - 11 A vs. G - - <1 (-) 39 (-) >0.05
rs9263970 chr6:31186601 HCG27 [+14856bp] C - 12 A vs. C 0.233 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs28722181 chr6:31243027 HLA-C [+3120bp] C - 12 A vs. T - 0.242 (T) >1 (-) 0 (-) >0.05
rs9263969 chr6:31186534 HCG27 [+14789bp] C - 12 T vs. C 0.233 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs1793891 chr6:31221698 HLA-C [-14828bp] C - 4 T vs. C 0.233 (T) 0.058 (T) <1 (-) 40 (-) >0.05
rs9468904 chr6:31209169 HLA-C [-27357bp] C - 11 C vs. G - - >1 (-) 39 (-) >0.05
rs3132487 chr6:31243008 HLA-C [+3101bp] C - 12 A vs. G 0.325 (T) 0.25 (A) <1 (-) 0 (-) >0.05
rs73730047 chr6:31271933 HLA-C [+32026bp] C - 8 T vs. G - - <1 (-) 39 (-) >0.05
rs4713451 chr6:31272581 HLA-C [+32674bp] C - 11 T vs. C 0.1 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs149117798 chr6:31208875 HLA-C [-27651bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs9380238 chr6:31267618 HLA-C [+27711bp] C - 12 A vs. G 0.075 (G) 0.2 (G) >1 (-) 9 (-) >0.05
rs2853940 chr6:31249732 HLA-C [+9825bp] C - 12 T vs. C 0.383 (C) - >1 (-) 0 (-) >0.05
rs28577989 chr6:31255762 HLA-C [+15855bp] C - 12 A vs. C 0.058 (C) 0.025 (C) >1 (-) 0 (-) >0.05
rs10081114 chr6:31271469 HLA-C [+31562bp] C - 8 T vs. C - - <1 (-) 40 (-) >0.05
rs114798972 chr6:31253514 HLA-C [+13607bp] C - 12 T vs. C 0.067 (T) 0.117 (T) >1 (-) 23 (-) >0.05
rs3899686 chr6:31193916 HCG27 [+22171bp] C - 12 A vs. G 0.483 (A) 0.267 (A) <1 (-) 0 (-) >0.05
rs28506073 chr6:31255809 HLA-C [+15902bp] C - 12 A vs. G 0.1 (G) 0.025 (G) >1 (-) 0 (-) >0.05
rs28894982 chr6:31188474 HCG27 [+16729bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]