HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
rs17192554 chr6:31266208 HLA-C [+26301bp] All: C 103,235 14 G vs. A 0.342 (G) 0.467 (G) 0.92 (0.89-0.96) 0 (0-38) 1.03e-05
rs9380240 chr6:31268832 HLA-C [+28925bp] All: C 103,235 14 C vs. T 0.375 (C) 0.375 (T) 0.93 (0.90-0.96) 0 (0-39) 1.07e-05
rs9366778 chr6:31269173 HLA-C [+29266bp] All: C 103,235 14 A vs. G 0.375 (A) 0.375 (G) 0.93 (0.90-0.96) 0 (0-38) 1.14e-05
rs17198923 chr6:31266207 HLA-C [+26300bp] All: C 103,235 14 T vs. C 0.358 (T) 0.467 (T) 0.92 (0.89-0.96) 0 (0-37) 1.30e-05
rs3905495 chr6:31265539 HLA-C [+25632bp] All: C 103,235 14 A vs. G 0.358 (A) 0.467 (A) 0.93 (0.90-0.96) 0 (0-47) 1.54e-05
rs6933818 chr6:31195804 HCG27 [+24059bp] All: C 103,235 14 C vs. T - - 1.09 (1.05-1.13) 0 (0-55) 2.21e-05
rs6919908 chr6:31244960 HLA-C [+5053bp] All: C 103,235 14 T vs. C 0.217 (T) 0.208 (T) 1.09 (1.05-1.14) 0 (0-50) 2.27e-05
rs9468914 chr6:31250606 HLA-C [+10699bp] All: C 103,235 14 C vs. A 0.342 (C) 0.417 (C) 0.93 (0.90-0.96) 0 (0-53) 2.56e-05
rs28367589 chr6:31251032 HLA-C [+11125bp] All: C 103,235 14 A vs. C 0.35 (A) 0.442 (A) 0.93 (0.90-0.96) 0 (0-53) 2.57e-05
rs28367600 chr6:31266495 HLA-C [+26588bp] All: C 103,235 14 G vs. A 0.325 (G) 0.475 (G) 0.93 (0.90-0.96) 0 (0-49) 2.63e-05
rs9468939 chr6:31270184 HLA-C [+30277bp] All: C 103,235 14 C vs. T 0.308 (C) 0.367 (C) 0.93 (0.90-0.96) 0 (0-42) 2.85e-05
rs2524058 chr6:31251569 HLA-C [+11662bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.11) 6 (0-58) 2.98e-05
rs9468916 chr6:31250809 HLA-C [+10902bp] All: C 103,235 14 C vs. T 0.242 (C) 0.192 (C) 0.92 (0.89-0.96) 0 (0-55) 3.72e-05
rs17198874 chr6:31265989 HLA-C [+26082bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.96) 0 (0-49) 3.84e-05
rs9461682 chr6:31251622 HLA-C [+11715bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.13) 7 (0-44) 3.89e-05
rs3094682 chr6:31264461 HLA-C [+24554bp] All: C 103,235 14 A vs. C 0.208 (A) 0.033 (A) 1.09 (1.05-1.14) 0 (0-52) 4.33e-05
rs28397303 chr6:31219763 HLA-C [-16763bp] All: C 79,215 7 G vs. T 0.158 (G) 0.233 (G) 0.86 (0.80-0.92) 53 (0-80) 4.74e-05
rs17198895 chr6:31266033 HLA-C [+26126bp] All: C 103,235 14 A vs. G 0.292 (A) 0.333 (A) 0.93 (0.90-0.96) 0 (0-48) 4.96e-05
rs17192519 chr6:31265940 HLA-C [+26033bp] All: C 103,235 14 T vs. C 0.292 (T) 0.35 (T) 0.93 (0.90-0.96) 0 (0-48) 5.34e-05
rs16899207 chr6:31266387 HLA-C [+26480bp] All: C 103,235 14 G vs. A 0.292 (G) 0.35 (G) 0.93 (0.90-0.96) 0 (0-47) 5.36e-05
rs6900323 chr6:31241270 HLA-C [+1363bp] C - 12 A vs. G - - <1 (-) 0 (-) <1.00e-04
rs2394964 chr6:31251542 HLA-C [+11635bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.12) 0 (0-55) 6.07e-05
rs2894362 chr6:31269461 HLA-C [+29554bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.13) 0 (0-54) 6.32e-05
rs2894361 chr6:31269458 HLA-C [+29551bp] All: C 103,235 14 C vs. T - - 1.09 (1.04-1.13) 0 (0-54) 6.58e-05
rs28367643 chr6:31268313 HLA-C [+28406bp] All: C 103,235 14 G vs. A 0.258 (G) 0.35 (G) 0.92 (0.88-0.96) 0 (0-54) 6.62e-05
rs28367646 chr6:31268332 HLA-C [+28425bp] All: C 103,235 14 C vs. A 0.258 (C) 0.342 (C) 0.92 (0.89-0.96) 0 (0-52) 6.69e-05
rs9468915 chr6:31250801 HLA-C [+10894bp] All: C 103,235 14 C vs. A 0.275 (C) 0.308 (C) 0.93 (0.89-0.96) 5 (0-57) 6.69e-05
rs28367647 chr6:31268356 HLA-C [+28449bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.12) 0 (0-52) 7.04e-05
rs28367658 chr6:31268647 HLA-C [+28740bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.14) 0 (0-53) 7.08e-05
rs28367660 chr6:31268666 HLA-C [+28759bp] All: C 103,235 14 A vs. C 0.292 (A) 0.35 (A) 0.92 (0.89-0.96) 0 (0-53) 7.16e-05
rs3130435 chr6:31219805 HLA-C [-16721bp] C - 9 A vs. G 0.467 (G) 0.4 (A) <1 (-) 18 (-) <1.00e-04
rs9461681 chr6:31251040 HLA-C [+11133bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.96) 0 (0-53) 7.34e-05
rs9461683 chr6:31251667 HLA-C [+11760bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.13) 0 (0-54) 7.37e-05
rs28367657 chr6:31268642 HLA-C [+28735bp] All: C 103,235 14 G vs. A - - 1.09 (1.04-1.13) 0 (0-54) 7.43e-05
rs28367648 chr6:31268367 HLA-C [+28460bp] All: C 103,235 14 A vs. C - - 1.09 (1.04-1.13) 0 (0-50) 7.66e-05
rs28367649 chr6:31268368 HLA-C [+28461bp] All: C 103,235 14 A vs. C - - 1.09 (1.04-1.13) 0 (0-50) 7.68e-05
rs28367602 chr6:31266720 HLA-C [+26813bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.96) 0 (0-51) 7.71e-05
rs28367603 chr6:31266730 HLA-C [+26823bp] All: C 103,235 14 C vs. A 0.292 (C) 0.35 (C) 0.93 (0.90-0.96) 0 (0-51) 7.72e-05
rs28367642 chr6:31268295 HLA-C [+28388bp] All: C 103,235 14 C vs. T 0.283 (C) 0.358 (C) 0.92 (0.89-0.96) 0 (0-55) 7.72e-05
rs6910962 chr6:31253109 HLA-C [+13202bp] All: C 103,235 14 T vs. C 0.292 (T) 0.35 (T) 0.93 (0.90-0.97) 0 (0-52) 7.73e-05
rs28367632 chr6:31268004 HLA-C [+28097bp] All: C 103,235 14 T vs. C 0.275 (T) 0.342 (T) 0.93 (0.89-0.96) 0 (0-48) 7.76e-05
rs28367633 chr6:31268008 HLA-C [+28101bp] All: C 103,235 14 T vs. C 0.267 (T) 0.342 (T) 0.93 (0.89-0.96) 0 (0-49) 7.88e-05
rs28367656 chr6:31268632 HLA-C [+28725bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.12) 0 (0-51) 8.22e-05
rs4275053 chr6:31266836 HLA-C [+26929bp] All: C 103,235 14 C vs. A 0.242 (C) 0.342 (C) 0.92 (0.88-0.96) 0 (0-54) 8.35e-05
rs9468923 chr6:31255522 HLA-C [+15615bp] All: C 103,235 14 C vs. T 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-53) 8.38e-05
rs2394965 chr6:31251581 HLA-C [+11674bp] All: C 103,235 14 G vs. T - - 1.08 (1.04-1.12) 0 (0-51) 8.48e-05
rs3873379 chr6:31262169 HLA-C [+22262bp] All: C 103,235 14 C vs. T 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-52) 8.51e-05
rs28367640 chr6:31268188 HLA-C [+28281bp] All: C 103,235 14 T vs. C 0.292 (T) 0.358 (T) 0.93 (0.90-0.97) 0 (0-51) 8.56e-05
rs2394963 chr6:31251462 HLA-C [+11555bp] All: C 103,235 14 T vs. C 0.292 (T) 0.35 (T) 0.93 (0.90-0.97) 0 (0-54) 8.63e-05

Association studies for this region [+]