HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs59217589 chr6:31254280 HLA-C [+14373bp] C - 12 A vs. T 0.067 (A) 0.117 (A) >1 (-) 22 (-) >0.05
rs111595250 chr6:31268298 HLA-C [+28391bp] C - 12 A vs. G 0.067 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs117446653 chr6:31267059 HLA-C [+27152bp] C - 9 T vs. C - 0.075 (T) <1 (-) 0 (-) >0.05
rs3873387 chr6:31275663 HLA-C [+35756bp] C - 11 A vs. C 0.2 (A) 0.108 (A) >1 (-) 2 (-) >0.05
rs73390981 chr6:31243578 HLA-C [+3671bp] C - 12 A vs. G 0.083 (A) 0.033 (A) <1 (-) 0 (-) >0.05
chr6:31205851 chr6:31205851 HLA-C [-30675bp] C - 5 T vs. C - - >1 (-) 1 (-) >0.05
rs4386816 chr6:31247135 HLA-C [+7228bp] C - 12 T vs. C 0.133 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs115320563 chr6:31188708 HCG27 [+16963bp] C - 12 T vs. C 0.083 (T) 0.083 (T) >1 (-) 4 (-) >0.05
rs116537416 chr6:31260633 HLA-C [+20726bp] C - 12 T vs. C 0.067 (C) 0.108 (C) <1 (-) 24 (-) >0.05
rs4098923 chr6:31193756 HCG27 [+22011bp] C - 12 A vs. G 0.475 (G) 0.233 (G) >1 (-) 0 (-) >0.05
rs2524076 chr6:31243830 HLA-C [+3923bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs60582327 chr6:31260888 HLA-C [+20981bp] C - 12 A vs. G 0.1 (A) - <1 (-) 0 (-) >0.05
rs114507149 chr6:31251206 HLA-C [+11299bp] C - 10 A vs. T - - >1 (-) 0 (-) >0.05
rs7773389 chr6:31200321 HCG27 [+28576bp] C - 12 A vs. T - - >1 (-) 9 (-) >0.05
rs9263977 chr6:31187529 HCG27 [+15784bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs9263976 chr6:31187414 HCG27 [+15669bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263990 chr6:31192215 HCG27 [+20470bp] C - 12 T vs. C 0.075 (T) 0.058 (T) <1 (-) 0 (-) >0.05
rs9264803 chr6:31270451 HLA-C [+30544bp] C - 12 T vs. C 0.275 (T) 0.108 (T) >1 (-) 0 (-) >0.05
rs9264944 chr6:31274619 HLA-C [+34712bp] C - 11 A vs. G 0.242 (G) 0.458 (G) >1 (-) 1 (-) >0.05
rs9461684 chr6:31253444 HLA-C [+13537bp] C - 12 T vs. C 0.1 (T) 0.025 (T) <1 (-) 0 (-) >0.05
rs9468919 chr6:31253866 HLA-C [+13959bp] C - 12 A vs. G 0.1 (A) 0.025 (A) <1 (-) 0 (-) >0.05
rs142609027 chr6:31218474 HLA-C [-18052bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs1793890 chr6:31222056 HLA-C [-14470bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs9263974 chr6:31186869 HCG27 [+15124bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs114489270 chr6:31260583 HLA-C [+20676bp] C - 12 T vs. C 0.058 (C) 0.117 (C) <1 (-) 25 (-) >0.05
rs116548532 chr6:31260594 HLA-C [+20687bp] C - 12 T vs. G 0.067 (G) 0.108 (G) <1 (-) 25 (-) >0.05
rs9263971 chr6:31186647 HCG27 [+14902bp] C - 12 T vs. C 0.092 (T) - <1 (-) 0 (-) >0.05
rs9263972 chr6:31186837 HCG27 [+15092bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs68037221 chr6:31237449 HLA-C C - 3 T vs. C 0.358 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs113816421 chr6:31263503 HLA-C [+23596bp] C - 12 A vs. C 0.1 (A) - <1 (-) 0 (-) >0.05
rs35196124 chr6:31261777 HLA-C [+21870bp] C - 12 A vs. T 0.067 (T) 0.125 (T) <1 (-) 25 (-) >0.05
rs12662096 chr6:31242445 HLA-C [+2538bp] C - 12 T vs. C 0.067 (C) 0.05 (C) <1 (-) 31 (-) >0.05
rs7383388 chr6:31246823 HLA-C [+6916bp] C - 12 A vs. T 0.35 (T) 0.15 (T) <1 (-) 30 (-) >0.05
rs9468900 chr6:31192998 HCG27 [+21253bp] C - 12 A vs. G 0.208 (A) 0.233 (A) <1 (-) 57 (-) >0.05
rs117922333 chr6:31211045 HLA-C [-25481bp] C - 4 C vs. G - 0.067 (C) >1 (-) 15 (-) >0.05
rs2040748 chr6:31243785 HLA-C [+3878bp] C - 12 T vs. G 0.183 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs34505728 chr6:31260004 HLA-C [+20097bp] C - 12 A vs. C 0.05 (A) 0.117 (A) >1 (-) 26 (-) >0.05
rs9348861 chr6:31252722 HLA-C [+12815bp] C - 12 A vs. G 0.033 (G) 0.158 (G) >1 (-) 17 (-) >0.05
rs117506082 chr6:31213225 HLA-C [-23301bp] C - 4 A vs. G - 0.067 (G) <1 (-) 15 (-) >0.05
rs7757983 chr6:31193764 HCG27 [+22019bp] C - 12 T vs. C 0.475 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs9501541 chr6:31209914 HLA-C [-26612bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9295970 chr6:31269522 HLA-C [+29615bp] C - 8 A vs. T - 0.017 (T) <1 (-) 41 (-) >0.05
rs117262920 chr6:31213368 HLA-C [-23158bp] C - 4 A vs. G - 0.067 (G) <1 (-) 16 (-) >0.05
rs9264069 chr6:31199981 HCG27 [+28236bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs55839536 chr6:31219958 HLA-C [-16568bp] C - 6 A vs. G 0.167 (A) 0.075 (A) >1 (-) 27 (-) >0.05
rs28572463 chr6:31209854 HLA-C [-26672bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
chr6:31211119 chr6:31211119 HLA-C [-25407bp] C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs117158609 chr6:31216393 HLA-C [-20133bp] C - 3 T vs. C - 0.067 (T) >1 (-) 33 (-) >0.05
rs149713840 chr6:31210290 HLA-C [-26236bp] C - 7 C vs. G - - >1 (-) 5 (-) >0.05
rs17198727 chr6:31256013 HLA-C [+16106bp] C - 12 T vs. C 0.033 (T) 0.158 (T) <1 (-) 16 (-) >0.05

Association studies for this region [+]