HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9366776 chr6:31256630 HLA-C [+16723bp] C - 12 A vs. G 0.033 (A) 0.158 (A) <1 (-) 15 (-) >0.05
rs6921855 chr6:31251312 HLA-C [+11405bp] C - 12 T vs. C 0.033 (C) 0.158 (C) >1 (-) 17 (-) >0.05
rs10947169 chr6:31256916 HLA-C [+17009bp] C - 12 T vs. C 0.033 (C) 0.167 (C) >1 (-) 15 (-) >0.05
rs6899660 chr6:31251643 HLA-C [+11736bp] C - 12 A vs. G - - >1 (-) 16 (-) >0.05
rs9348862 chr6:31252747 HLA-C [+12840bp] C - 12 T vs. C 0.033 (C) 0.15 (C) >1 (-) 16 (-) >0.05
rs9368670 chr6:31252882 HLA-C [+12975bp] C - 12 T vs. C 0.033 (T) 0.158 (T) <1 (-) 16 (-) >0.05
rs34481210 chr6:31219777 HLA-C [-16749bp] C - 5 A vs. C - 0.067 (C) <1 (-) 58 (-) >0.05
rs72861464 chr6:31255063 HLA-C [+15156bp] C - 12 A vs. G 0.033 (G) 0.158 (G) >1 (-) 16 (-) >0.05
rs9295969 chr6:31261470 HLA-C [+21563bp] C - 12 A vs. G 0.033 (A) 0.158 (A) <1 (-) 14 (-) >0.05
rs9461680 chr6:31243347 HLA-C [+3440bp] C - 12 T vs. C 0.2 (T) 0.292 (T) <1 (-) 0 (-) >0.05
rs116227766 chr6:31219650 HLA-C [-16876bp] C - 5 T vs. C - 0.083 (T) >1 (-) 58 (-) >0.05
rs3873377 chr6:31258868 HLA-C [+18961bp] C - 12 T vs. C 0.033 (C) 0.15 (C) >1 (-) 15 (-) >0.05
rs9348863 chr6:31262461 HLA-C [+22554bp] C - 12 T vs. C 0.033 (C) 0.158 (C) >1 (-) 14 (-) >0.05
rs16899147 chr6:31255201 HLA-C [+15294bp] C - 12 A vs. G 0.033 (G) 0.158 (G) >1 (-) 16 (-) >0.05
rs6916525 chr6:31259902 HLA-C [+19995bp] C - 12 A vs. G 0.033 (G) 0.158 (G) >1 (-) 15 (-) >0.05
rs6939681 chr6:31259952 HLA-C [+20045bp] C - 12 T vs. G 0.033 (G) 0.158 (G) >1 (-) 15 (-) >0.05
rs9394051 chr6:31260569 HLA-C [+20662bp] C - 12 C vs. G 0.033 (C) 0.158 (C) <1 (-) 15 (-) >0.05
rs6927444 chr6:31192847 HCG27 [+21102bp] C - 12 T vs. C 0.208 (C) 0.233 (C) >1 (-) 57 (-) >0.05
rs115185769 chr6:31243605 HLA-C [+3698bp] C - 9 T vs. C 0.017 (C) 0.058 (C) >1 (-) 0 (-) >0.05
rs1639108 chr6:31196554 HCG27 [+24809bp] C - 11 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs117127791 chr6:31260398 HLA-C [+20491bp] C - 3 A vs. G - 0.108 (G) <1 (-) 0 (-) >0.05
rs7761965 chr6:31273495 HLA-C [+33588bp] C - 11 A vs. G 0.108 (A) 0.367 (A) <1 (-) 16 (-) >0.05
rs3130948 chr6:31193523 HCG27 [+21778bp] C - 12 T vs. C 0.242 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs3873382 chr6:31263256 HLA-C [+23349bp] C - 12 A vs. G 0.033 (G) 0.158 (G) >1 (-) 13 (-) >0.05
rs3873381 chr6:31263231 HLA-C [+23324bp] C - 12 T vs. G 0.033 (G) 0.15 (G) >1 (-) 13 (-) >0.05
rs79999451 chr6:31248736 HLA-C [+8829bp] C - 10 A vs. G - 0.05 (A) <1 (-) 0 (-) >0.05
rs35997521 chr6:31219693 HLA-C [-16833bp] C - 5 A vs. G - - >1 (-) 59 (-) >0.05
rs28633954 chr6:31275007 HLA-C [+35100bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs4373355 chr6:31193155 HCG27 [+21410bp] C - 12 T vs. C 0.342 (C) 0.125 (C) <1 (-) 5 (-) >0.05
rs4455663 chr6:31193164 HCG27 [+21419bp] C - 12 T vs. C 0.35 (C) 0.208 (C) <1 (-) 5 (-) >0.05
rs9264962 chr6:31276435 HLA-C [+36528bp] C - 11 C vs. G 0.358 (G) 0.0 (G) <1 (-) 0 (-) >0.05
rs12332925 chr6:31209814 HLA-C [-26712bp] C - 10 T vs. G - - <1 (-) 44 (-) >0.05
rs6911422 chr6:31276222 HLA-C [+36315bp] C - 11 T vs. C 0.2 (T) 0.067 (T) >1 (-) 0 (-) >0.05
rs9357122 chr6:31260345 HLA-C [+20438bp] C - 12 T vs. C 0.033 (C) 0.15 (C) >1 (-) 14 (-) >0.05
rs9264396 chr6:31229307 HLA-C [-7219bp] C - 3 T vs. C 0.417 (T) 0.408 (C) <1 (-) 53 (-) >0.05
rs28367689 chr6:31276606 HLA-C [+36699bp] C - 11 A vs. G 0.192 (A) 0.158 (A) >1 (-) 0 (-) >0.05
rs9468924 chr6:31256948 HLA-C [+17041bp] C - 9 A vs. G - - >1 (-) 35 (-) >0.05
rs17192393 chr6:31256065 HLA-C [+16158bp] C - 12 C vs. G 0.067 (G) 0.125 (G) <1 (-) 25 (-) >0.05
rs113905606 chr6:31200316 HCG27 [+28571bp] C - 5 T vs. G - - <1 (-) 0 (-) >0.05
rs116405890 chr6:31262870 HLA-C [+22963bp] C - 12 T vs. C 0.067 (T) 0.108 (T) >1 (-) 20 (-) >0.05
rs35206735 chr6:31259837 HLA-C [+19930bp] C - 12 A vs. G 0.042 (A) 0.108 (A) >1 (-) 26 (-) >0.05
rs13200569 chr6:31243615 HLA-C [+3708bp] C - 12 A vs. G 0.275 (A) 0.342 (A) <1 (-) 0 (-) >0.05
rs9357121 chr6:31240479 HLA-C [+572bp] C - 10 T vs. G 0.017 (G) 0.15 (G) >1 (-) 16 (-) >0.05
rs59751510 chr6:31245309 HLA-C [+5402bp] C - 12 A vs. C 0.1 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs34254374 chr6:31259834 HLA-C [+19927bp] C - 12 T vs. G 0.033 (G) 0.108 (G) <1 (-) 26 (-) >0.05
rs35667233 chr6:31259269 HLA-C [+19362bp] C - 12 T vs. C 0.042 (C) 0.125 (C) <1 (-) 25 (-) >0.05
rs1049650 chr6:31236808 HLA-C C - 3 C vs. G 0.058 (G) 0.242 (G) >1 (-) 47 (-) >0.05
rs115042633 chr6:31260201 HLA-C [+20294bp] C - 12 A vs. T 0.067 (A) 0.108 (A) >1 (-) 25 (-) >0.05
rs6911704 chr6:31276245 HLA-C [+36338bp] C - 11 A vs. G 0.2 (A) 0.167 (A) >1 (-) 0 (-) >0.05
rs9468911 chr6:31243359 HLA-C [+3452bp] C - 12 A vs. G 0.2 (A) 0.292 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]