HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs66736379 chr6:31244475 HLA-C [+4568bp] C - 12 A vs. G 0.1 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs9501560 chr6:31232998 HLA-C [-3528bp] C - 4 A vs. T - - <1 (-) 0 (-) >0.05
rs112613205 chr6:31244436 HLA-C [+4529bp] C - 12 C vs. G 0.1 (G) 0.1 (G) >1 (-) 0 (-) >0.05
rs7754581 chr6:31277368 HLA-C [+37461bp] C - 10 T vs. C 0.2 (T) 0.125 (T) >1 (-) 5 (-) >0.05
rs114612857 chr6:31250876 HLA-C [+10969bp] C - 12 C vs. G 0.067 (G) 0.117 (G) <1 (-) 24 (-) >0.05
rs67654505 chr6:31244571 HLA-C [+4664bp] C - 12 C vs. G 0.1 (C) 0.1 (C) <1 (-) 0 (-) >0.05
rs115950506 chr6:31262035 HLA-C [+22128bp] C - 11 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs34743644 chr6:31259443 HLA-C [+19536bp] C - 12 T vs. C 0.067 (T) 0.117 (T) >1 (-) 27 (-) >0.05
rs35870025 chr6:31259435 HLA-C [+19528bp] C - 12 T vs. C 0.067 (T) 0.1 (T) >1 (-) 27 (-) >0.05
rs148416919 chr6:31270786 HLA-C [+30879bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs116506525 chr6:31259458 HLA-C [+19551bp] C - 12 T vs. C 0.05 (C) 0.108 (C) <1 (-) 27 (-) >0.05
rs78198539 chr6:31270859 HLA-C [+30952bp] C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs28367688 chr6:31276513 HLA-C [+36606bp] C - 11 A vs. C 0.208 (A) 0.158 (A) >1 (-) 0 (-) >0.05
rs113475966 chr6:31246542 HLA-C [+6635bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs9263985 chr6:31190538 HCG27 [+18793bp] C - 12 A vs. G 0.35 (A) 0.158 (A) >1 (-) 8 (-) >0.05
rs28616643 chr6:31255651 HLA-C [+15744bp] C - 12 T vs. G 0.1 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs114899495 chr6:31262761 HLA-C [+22854bp] C - 12 T vs. C 0.058 (T) 0.117 (T) >1 (-) 23 (-) >0.05
rs116654277 chr6:31262769 HLA-C [+22862bp] C - 12 T vs. C 0.058 (T) 0.117 (T) >1 (-) 23 (-) >0.05
rs113744451 chr6:31245213 HLA-C [+5306bp] C - 12 A vs. G 0.1 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs111689981 chr6:31246450 HLA-C [+6543bp] C - 12 T vs. C 0.1 (C) - >1 (-) 0 (-) >0.05
rs67772234 chr6:31246410 HLA-C [+6503bp] C - 12 A vs. G 0.1 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs111373731 chr6:31244151 HLA-C [+4244bp] C - 12 T vs. C 0.1 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs113056286 chr6:31246253 HLA-C [+6346bp] C - 12 T vs. C 0.1 (C) - >1 (-) 0 (-) >0.05
rs12663075 chr6:31269256 HLA-C [+29349bp] C - 12 A vs. C 0.067 (A) 0.117 (A) >1 (-) 19 (-) >0.05
rs67853874 chr6:31246177 HLA-C [+6270bp] C - 12 A vs. G 0.1 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs73392819 chr6:31246119 HLA-C [+6212bp] C - 12 T vs. C 0.092 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs72855948 chr6:31246139 HLA-C [+6232bp] C - 12 A vs. T 0.092 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs72855758 chr6:31247815 HLA-C [+7908bp] C - 12 T vs. C 0.1 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs147017299 chr6:31247464 HLA-C [+7557bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs17198692 chr6:31248655 HLA-C [+8748bp] C - 12 T vs. G 0.092 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs56940913 chr6:31245508 HLA-C [+5601bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs7454812 chr6:31247281 HLA-C [+7374bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs115226524 chr6:31257120 HLA-C [+17213bp] C - 12 T vs. C 0.067 (C) 0.1 (C) <1 (-) 26 (-) >0.05
rs4351259 chr6:31247108 HLA-C [+7201bp] C - 12 A vs. G 0.092 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs72855945 chr6:31246015 HLA-C [+6108bp] C - 12 T vs. C 0.1 (T) 0.1 (T) <1 (-) 0 (-) >0.05
rs112220608 chr6:31246668 HLA-C [+6761bp] C - 12 A vs. G 0.1 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs17191433 chr6:31221073 HLA-C [-15453bp] C - 4 T vs. C - - <1 (-) 63 (-) >0.05
rs67394384 chr6:31246676 HLA-C [+6769bp] C - 12 T vs. C 0.1 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs116281893 chr6:31252527 HLA-C [+12620bp] C - 12 T vs. C 0.067 (C) 0.092 (C) <1 (-) 24 (-) >0.05
rs115182712 chr6:31251954 HLA-C [+12047bp] C - 12 A vs. G 0.067 (G) 0.083 (G) <1 (-) 24 (-) >0.05
rs61172648 chr6:31245476 HLA-C [+5569bp] C - 12 A vs. C 0.1 (A) 0.117 (A) <1 (-) 0 (-) >0.05
rs1616538 chr6:31276042 HLA-C [+36135bp] C - 12 A vs. C 0.142 (A) - <1 (-) 0 (-) >0.05
rs4590261 chr6:31192963 HCG27 [+21218bp] C - 12 T vs. C 0.35 (C) 0.242 (C) <1 (-) 5 (-) >0.05
rs114020623 chr6:31251962 HLA-C [+12055bp] C - 12 T vs. C 0.067 (T) 0.083 (T) >1 (-) 24 (-) >0.05
rs9394052 chr6:31260708 HLA-C [+20801bp] C - 12 T vs. C 0.033 (T) 0.15 (T) <1 (-) 10 (-) >0.05
rs115931507 chr6:31252406 HLA-C [+12499bp] C - 12 T vs. C 0.067 (C) 0.067 (C) <1 (-) 24 (-) >0.05
rs73392806 chr6:31244865 HLA-C [+4958bp] C - 12 T vs. C 0.1 (T) 0.1 (T) <1 (-) 0 (-) >0.05
rs116647350 chr6:31268833 HLA-C [+28926bp] C - 12 A vs. G 0.067 (A) 0.117 (A) >1 (-) 22 (-) >0.05
rs2853946 chr6:31247203 HLA-C [+7296bp] C - 12 A vs. T 0.242 (T) 0.125 (T) >1 (-) 0 (-) >0.05
rs115727572 chr6:31253034 HLA-C [+13127bp] C - 12 T vs. G 0.067 (G) 0.117 (G) <1 (-) 24 (-) >0.05

Association studies for this region [+]