AGAP1, chr2:236402733-237040444 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10929159 chr2:236932963 AGAP1 All: C 108,990 15 T vs. G 0.358 (T) 0.492 (T) 0.92 (0.89-0.95) 0 (0-53) 1.53e-07
Meta_image?name=rs10929159

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10929159 chr2:236932963 AGAP1 All: C 108,990 15 T vs. G 0.358 (T) 0.492 (T) 0.92 (0.89-0.95) 0 (0-53) 1.53e-07
rs1349729 chr2:236928217 AGAP1 All: C 108,990 15 A vs. G 0.367 (A) 0.467 (A) 0.92 (0.89-0.95) 9 (0-47) 1.86e-07
rs10200358 chr2:236935791 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.5 (A) 0.92 (0.89-0.95) 2 (0-55) 2.00e-07
rs7565059 chr2:236926347 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.467 (A) 0.92 (0.89-0.95) 8 (0-45) 2.16e-07
rs7557044 chr2:236932554 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.5 (C) 0.92 (0.89-0.95) 6 (0-56) 2.28e-07
rs1349732 chr2:236923716 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.89-0.95) 8 (0-44) 2.30e-07
rs9636243 chr2:236925259 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.89-0.95) 8 (0-45) 2.34e-07
rs11692136 chr2:236936377 AGAP1 All: C 108,990 15 T vs. C 0.35 (T) 0.5 (T) 0.92 (0.89-0.95) 0 (0-54) 2.37e-07
rs2123512 chr2:236920731 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.483 (C) 0.92 (0.89-0.95) 6 (0-56) 2.42e-07
rs7557693 chr2:236920713 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.89-0.95) 6 (0-56) 2.44e-07
rs2123511 chr2:236923187 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.483 (C) 0.92 (0.89-0.95) 3 (0-55) 2.55e-07
rs10170434 chr2:236937578 AGAP1 All: C 108,990 15 G vs. A 0.35 (G) 0.492 (G) 0.92 (0.89-0.95) 6 (0-56) 2.56e-07
rs1349731 chr2:236924047 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.483 (A) 0.92 (0.89-0.95) 3 (0-55) 2.58e-07
rs7598567 chr2:236920673 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.483 (A) 0.92 (0.89-0.95) 6 (0-57) 2.60e-07
rs6761121 chr2:236922541 AGAP1 All: C 108,990 15 T vs. C 0.358 (T) 0.483 (T) 0.92 (0.89-0.95) 1 (0-54) 2.62e-07
rs2317305 chr2:236922151 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.89-0.95) 1 (0-54) 2.64e-07
rs765880 chr2:236940317 AGAP1 All: C 108,990 15 C vs. A 0.367 (C) 0.5 (C) 0.92 (0.89-0.95) 7 (0-43) 2.64e-07
rs2317302 chr2:236921608 AGAP1 All: C 108,990 15 C vs. T - - 1.09 (1.05-1.12) 1 (0-54) 2.67e-07
rs2317303 chr2:236921702 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.483 (A) 0.92 (0.89-0.95) 1 (0-54) 2.74e-07
rs2123513 chr2:236920638 AGAP1 All: C 108,990 15 T vs. C 0.358 (T) 0.483 (T) 0.92 (0.89-0.95) 6 (0-56) 2.80e-07
rs12053257 chr2:236920174 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.483 (C) 0.92 (0.89-0.95) 6 (0-57) 2.85e-07
rs34769167 chr2:236920442 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.483 (A) 0.92 (0.89-0.95) 6 (0-56) 2.85e-07
rs6431419 chr2:236919669 AGAP1 All: C 108,990 15 C vs. A 0.358 (C) 0.492 (C) 0.92 (0.89-0.95) 7 (0-57) 3.03e-07
rs6749436 chr2:236919992 AGAP1 All: C 108,990 15 T vs. C 0.358 (T) 0.483 (T) 0.92 (0.89-0.95) 6 (0-57) 3.03e-07
rs6431418 chr2:236919559 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.492 (C) 0.92 (0.89-0.95) 7 (0-57) 3.06e-07
rs6758225 chr2:236939412 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.5 (G) 0.92 (0.89-0.95) 7 (0-43) 3.11e-07
rs11890052 chr2:236918533 AGAP1 All: C 108,990 15 A vs. G 0.358 (A) 0.467 (A) 0.92 (0.89-0.95) 8 (0-44) 3.49e-07
rs3738994 chr2:236918539 AGAP1 All: C 108,990 15 T vs. C 0.358 (T) 0.467 (T) 0.92 (0.89-0.95) 7 (0-44) 3.56e-07
rs3738993 chr2:236918671 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.483 (C) 0.92 (0.89-0.95) 10 (0-48) 3.64e-07
rs7569558 chr2:236924309 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.89-0.95) 6 (0-56) 3.76e-07
rs7596780 chr2:236924303 AGAP1 All: C 108,990 15 C vs. T 0.358 (C) 0.483 (C) 0.92 (0.89-0.95) 5 (0-56) 3.79e-07
rs13025044 chr2:236916549 AGAP1 All: C 108,990 15 G vs. A 0.358 (G) 0.483 (G) 0.92 (0.89-0.95) 7 (0-57) 3.88e-07
rs876739 chr2:236943672 AGAP1 All: C 108,990 15 C vs. T 0.35 (C) 0.5 (C) 0.92 (0.89-0.95) 9 (0-47) 4.52e-07
rs3754659 chr2:236950634 AGAP1 All: C 108,990 15 A vs. G 0.35 (A) 0.458 (A) 0.92 (0.90-0.96) 20 (0-56) 1.93e-06
rs10211043 chr2:236909416 AGAP1 All: C 108,990 15 A vs. G 0.375 (A) 0.242 (A) 0.92 (0.89-0.95) 14 (0-52) 4.60e-06
rs10929157 chr2:236920156 AGAP1 C - 13 C vs. G 0.358 (C) 0.483 (C) <1 (-) 4 (-) <1.00e-04
rs36000283 chr2:236934189 AGAP1 C - 13 C vs. G 0.35 (G) 0.5 (G) >1 (-) 2 (-) <1.00e-04
rs4442947 chr2:236931642 AGAP1 C - 13 C vs. G 0.358 (G) 0.475 (G) >1 (-) 11 (-) <1.00e-04
rs10179607 chr2:236915645 AGAP1 C - 13 C vs. G 0.358 (G) 0.475 (G) >1 (-) 5 (-) <1.00e-04
rs7558353 chr2:236927888 AGAP1 All: C 108,990 15 C vs. T 0.483 (C) 0.35 (T) 0.93 (0.90-0.96) 7 (0-43) 7.94e-06
rs7420415 chr2:236922737 AGAP1 All: C 108,990 15 A vs. G 0.492 (A) 0.342 (A) 1.07 (1.04-1.11) 4 (0-56) 1.20e-05
rs10206890 chr2:236922324 AGAP1 All: C 108,990 15 A vs. C 0.5 (A) 0.342 (A) 1.07 (1.04-1.11) 4 (0-56) 1.42e-05
rs3768949 chr2:236954560 AGAP1 C - 13 A vs. G 0.058 (A) 0.167 (A) <1 (-) 20 (-) <1.00e-04
rs3768951 chr2:236954470 AGAP1 C - 13 A vs. G 0.058 (A) 0.15 (A) <1 (-) 20 (-) <1.00e-04
rs79658730 chr2:236953538 AGAP1 C - 13 T vs. C 0.033 (C) 0.175 (C) >1 (-) 29 (-) <1.00e-04
rs10929160 chr2:236936753 AGAP1 C - 13 A vs. T 0.475 (A) 0.358 (T) <1 (-) 0 (-) <1.00e-04
rs3768953 chr2:236952594 AGAP1 C - 13 A vs. G 0.067 (A) 0.175 (A) <1 (-) 32 (-) <1.00e-04
rs35116044 chr2:236912227 AGAP1 All: C 108,990 15 C vs. T 0.492 (C) 0.333 (T) 0.94 (0.91-0.97) 10 (0-48) 6.64e-05
rs79554484 chr2:236952162 AGAP1 C - 13 A vs. G - - <1 (-) 30 (-) <1.00e-04
rs76323164 chr2:236955815 AGAP1 C - 13 T vs. C 0.075 (T) 0.15 (T) <1 (-) 14 (-) <1.00e-04

Association studies for this region [+]