CPT2, chr1:53662101-53679869 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs80163194 chr1:53615668 SLC1A7 [+7379bp] C - 13 A vs. G - - >1 (-) 2 (-) >0.05
rs1288345 chr1:53621394 SLC1A7 [+13105bp] C - 13 A vs. C 0.242 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs1296145 chr1:53623538 SLC1A7 [+15249bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs141946470 chr1:53693463 MAGOH C - 5 A vs. G - - >1 (-) 0 (-) >0.05
rs74446923 chr1:53628545 SLC1A7 [+20256bp] C - 9 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05
rs10888769 chr1:53616806 SLC1A7 [+8517bp] C - 13 A vs. G 0.233 (G) - <1 (-) 0 (-) >0.05
rs1288331 chr1:53631049 SLC1A7 [+22760bp] C - 13 T vs. C 0.333 (C) 0.283 (C) >1 (-) 0 (-) >0.05
rs1288344 chr1:53621345 SLC1A7 [+13056bp] C - 13 T vs. G 0.233 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs1288332 chr1:53630960 SLC1A7 [+22671bp] C - 13 A vs. G 0.333 (A) 0.283 (A) <1 (-) 0 (-) >0.05
rs2388 chr1:53620340 SLC1A7 [+12051bp] C - 13 T vs. C 0.233 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs12408900 chr1:53717656 LRP8 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs1288343 chr1:53619912 SLC1A7 [+11623bp] C - 13 A vs. G 0.242 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs6668172 chr1:53729210 LRP8 C - 13 T vs. C 0.433 (T) 0.217 (C) <1 (-) 0 (-) >0.05
rs3737983 chr1:53716416 LRP8 C - 13 A vs. G 0.442 (A) 0.217 (G) <1 (-) 0 (-) >0.05
rs115884122 chr1:53681897 C1orf123 C - 8 T vs. G 0.025 (T) - <1 (-) 0 (-) >0.05
rs869988 chr1:53723349 LRP8 C - 13 T vs. C 0.433 (C) 0.192 (T) >1 (-) 0 (-) >0.05
rs138386728 chr1:53616969 SLC1A7 [+8680bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs869987 chr1:53723190 LRP8 C - 13 T vs. G 0.433 (T) 0.192 (G) <1 (-) 0 (-) >0.05
rs10749689 chr1:53721864 LRP8 C - 13 C vs. G 0.433 (C) 0.192 (G) <1 (-) 0 (-) >0.05
rs11206127 chr1:53713549 LRP8 C - 13 A vs. G 0.442 (A) 0.217 (G) <1 (-) 0 (-) >0.05
rs77259391 chr1:53678227 CPT2 C - 13 A vs. G 0.017 (G) - >1 (-) 0 (-) >0.05
rs3737984 chr1:53708850 LRP8 [-2367bp] C - 13 T vs. G 0.4 (T) 0.258 (G) <1 (-) 0 (-) >0.05
rs35027235 chr1:53656293 CPT2 [-5808bp] C - 13 T vs. C 0.383 (T) 0.458 (C) <1 (-) 0 (-) >0.05
rs35401495 chr1:53721149 LRP8 C - 7 T vs. C - - >1 (-) 0 (-) >0.05
rs116151125 chr1:53642460 CPT2 [-19641bp] C - 8 T vs. C 0.017 (T) - <1 (-) 21 (-) >0.05
rs2297663 chr1:53722752 LRP8 C - 13 A vs. C 0.417 (C) 0.442 (A) >1 (-) 0 (-) >0.05
rs7523531 chr1:53657086 CPT2 [-5015bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs7549319 chr1:53657567 CPT2 [-4534bp] C - 13 T vs. C 0.392 (T) 0.483 (T) <1 (-) 0 (-) >0.05
rs74434961 chr1:53690097 MAGOH [-2467bp] C - 13 A vs. G 0.05 (A) - >1 (-) 2 (-) >0.05
rs874348 chr1:53631805 SLC1A7 [+23516bp] C - 13 T vs. C 0.442 (T) 0.325 (T) >1 (-) 0 (-) >0.05
rs10888771 chr1:53617071 SLC1A7 [+8782bp] C - 13 A vs. G 0.4 (G) 0.35 (G) >1 (-) 0 (-) >0.05
rs11206117 chr1:53615701 SLC1A7 [+7412bp] C - 13 T vs. C 0.4 (T) 0.367 (T) <1 (-) 0 (-) >0.05
rs1288353 chr1:53624820 SLC1A7 [+16531bp] C - 13 T vs. C 0.408 (T) 0.425 (T) >1 (-) 0 (-) >0.05
rs12410239 chr1:53657595 CPT2 [-4506bp] C - 13 A vs. T 0.392 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs1288337 chr1:53630003 SLC1A7 [+21714bp] C - 13 A vs. G 0.425 (A) 0.342 (A) <1 (-) 0 (-) >0.05
rs35316080 chr1:53656676 CPT2 [-5425bp] C - 13 A vs. G 0.4 (G) 0.433 (A) >1 (-) 0 (-) >0.05
rs10888768 chr1:53615541 SLC1A7 [+7252bp] C - 13 T vs. C 0.4 (C) 0.35 (C) >1 (-) 0 (-) >0.05
rs5177 chr1:53711735 LRP8 C - 13 C vs. G 0.425 (C) 0.442 (G) <1 (-) 0 (-) >0.05
rs1288333 chr1:53630914 SLC1A7 [+22625bp] C - 13 C vs. G 0.417 (G) 0.333 (G) >1 (-) 0 (-) >0.05
rs12031155 chr1:53714139 LRP8 C - 13 T vs. C 0.442 (T) 0.442 (T) <1 (-) 0 (-) >0.05
rs12731127 chr1:53625626 SLC1A7 [+17337bp] C - 13 A vs. G 0.283 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs5174 chr1:53712727 LRP8 C - 12 T vs. C 0.425 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs1288350 chr1:53624259 SLC1A7 [+15970bp] C - 13 A vs. G 0.417 (G) 0.425 (G) <1 (-) 0 (-) >0.05
rs10888770 chr1:53616916 SLC1A7 [+8627bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs1288347 chr1:53622093 SLC1A7 [+13804bp] C - 13 A vs. G 0.4 (A) 0.408 (A) >1 (-) 0 (-) >0.05
rs1679936 chr1:53613018 SLC1A7 [+4729bp] C - 13 C vs. G 0.4 (G) 0.35 (G) >1 (-) 0 (-) >0.05
rs79149207 chr1:53628559 SLC1A7 [+20270bp] C - 13 A vs. G 0.058 (A) - <1 (-) 0 (-) >0.05
rs78003315 chr1:53655037 CPT2 [-7064bp] C - 12 A vs. G - 0.033 (A) <1 (-) 0 (-) >0.05
rs76071772 chr1:53652710 CPT2 [-9391bp] C - 12 T vs. C 0.017 (T) - <1 (-) 0 (-) >0.05
rs4926961 chr1:53625057 SLC1A7 [+16768bp] C - 13 C vs. G 0.4 (G) 0.425 (G) <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.