GAL3ST1, chr22:30950622-30970574 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs73398305 chr22:31019633 TCN2 C - 12 A vs. G 0.017 (A) 0.217 (A) >1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs73398305 chr22:31019633 TCN2 C - 12 A vs. G 0.017 (A) 0.217 (A) >1 (-) 0 (-) <0.05
rs42937 chr22:30962886 GAL3ST1 C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs42936 chr22:30962878 GAL3ST1 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs116933452 chr22:31008333 TCN2 C - 10 T vs. C 0.017 (T) 0.2 (T) >1 (-) 0 (-) <0.05
rs2267162 chr22:31010997 TCN2 C - 10 T vs. C 0.033 (T) 0.267 (T) >1 (-) 0 (-) <0.05
rs16988855 chr22:31011923 TCN2 C - 10 T vs. C 0.025 (C) 0.2 (C) <1 (-) 0 (-) <0.05
rs139431018 chr22:30996698 PES1 C - 13 T vs. G - - >1 (-) 17 (-) <0.05
rs2009857 chr22:31014377 TCN2 C - 10 T vs. C 0.025 (T) 0.2 (T) >1 (-) 0 (-) <0.05
rs117958009 chr22:31014891 TCN2 C - 10 A vs. G - 0.242 (A) >1 (-) 0 (-) <0.05
rs73396395 chr22:31014860 TCN2 C - 10 A vs. G - - >1 (-) 0 (-) <0.05
rs2267165 chr22:31017678 TCN2 C - 10 C vs. G - - <1 (-) 0 (-) <0.05
rs8141515 chr22:31018072 TCN2 C - 10 T vs. C 0.025 (C) 0.175 (C) <1 (-) 0 (-) <0.05
rs7288385 chr22:31015573 TCN2 C - 10 A vs. C 0.025 (A) 0.242 (A) >1 (-) 0 (-) <0.05
rs7288627 chr22:31015562 TCN2 C - 10 A vs. G 0.025 (A) 0.242 (A) >1 (-) 0 (-) <0.05
rs2267166 chr22:31018078 TCN2 C - 10 A vs. G 0.025 (A) 0.2 (A) >1 (-) 0 (-) <0.05
rs7289549 chr22:31004188 TCN2 C - 13 C vs. G 0.067 (C) 0.342 (C) >1 (-) 50 (-) <0.05
rs76977031 chr22:30954832 GAL3ST1 C - 11 T vs. C 0.008 (C) - <1 (-) 53 (-) <0.05
rs11913239 chr22:31009839 TCN2 C - 12 T vs. C 0.025 (T) 0.225 (T) >1 (-) 0 (-) <0.05
rs73396379 chr22:31009752 TCN2 C - 12 T vs. C 0.025 (C) 0.225 (C) <1 (-) 0 (-) <0.05
rs2283873 chr22:31013296 TCN2 C - 12 A vs. G - 0.242 (A) >1 (-) 0 (-) <0.05
rs150790397 chr22:30902896 SEC14L4 [+1198bp] C - 4 T vs. C - - >1 (-) 74 (-) <0.05
rs2267163 chr22:31011557 TCN2 C - 13 T vs. C 0.475 (T) 0.467 (C) <1 (-) 0 (-) <0.05
rs62227035 chr22:31001056 PES1 C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs1801198 chr22:31011610 TCN2 C - 13 C vs. G 0.475 (G) 0.442 (C) >1 (-) 0 (-) <0.05
rs7364237 chr22:30980922 PES1 C - 13 T vs. G 0.042 (T) 0.058 (T) >1 (-) 0 (-) <0.05
rs5753236 chr22:31009820 TCN2 C - 13 C vs. G 0.475 (G) 0.425 (C) >1 (-) 0 (-) <0.05
rs117492340 chr22:31000489 PES1 C - 12 A vs. G 0.033 (A) - <1 (-) 27 (-) <0.05
rs140043016 chr22:30994023 PES1 C - 13 A vs. T - - >1 (-) 25 (-) >0.05
rs4820885 chr22:31012756 TCN2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs117005270 chr22:31014006 TCN2 C - 12 T vs. C 0.025 (T) - <1 (-) 25 (-) >0.05
rs4820884 chr22:31008436 TCN2 C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs4820020 chr22:31006004 TCN2 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs111808252 chr22:31014572 TCN2 C - 11 A vs. G - 0.183 (A) >1 (-) 0 (-) >0.05
rs4820880 chr22:31005244 TCN2 C - 13 A vs. C 0.033 (A) - <1 (-) 0 (-) >0.05
rs5997702 chr22:31004828 TCN2 C - 13 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs35157781 chr22:30975053 PES1 C - 4 C vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs2528456 chr22:30964903 GAL3ST1 C - 13 A vs. G - - <1 (-) 33 (-) >0.05
rs112812772 chr22:31004597 TCN2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs145097815 chr22:31008462 TCN2 C - 13 T vs. G - - <1 (-) 20 (-) >0.05
rs76670767 chr22:31007371 TCN2 C - 13 T vs. C 0.033 (C) - >1 (-) 20 (-) >0.05
rs2072196 chr22:30975513 PES1 C - 13 T vs. C 0.3 (T) 0.308 (T) >1 (-) 0 (-) >0.05
rs35915865 chr22:31008867 TCN2 C - 13 T vs. C 0.033 (C) - >1 (-) 20 (-) >0.05
rs80014130 chr22:31007238 TCN2 C - 13 T vs. G 0.017 (T) - <1 (-) 20 (-) >0.05
rs77763564 chr22:31006841 TCN2 C - 13 T vs. C 0.033 (T) - <1 (-) 20 (-) >0.05
rs4820881 chr22:31005250 TCN2 C - 13 A vs. G 0.033 (G) - >1 (-) 21 (-) >0.05
rs9621033 chr22:30972927 PES1 C - 13 C vs. G 0.033 (C) - >1 (-) 32 (-) >0.05
chr22:30971818 chr22:30971818 PES1 [-794bp] C - 6 T vs. C - - >1 (-) 0 (-) >0.05
rs115885797 chr22:30996195 PES1 C - 13 T vs. C - 0.1 (T) >1 (-) 0 (-) >0.05
rs12160098 chr22:31014419 TCN2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs4820018 chr22:30986172 PES1 C - 13 A vs. G 0.158 (A) 0.233 (A) <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.