HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1614015 chr6:31278605 HLA-C [+38698bp] C - 7 T vs. C 0.492 (C) 0.342 (C) <1 (-) 54 (-) <0.05
rs9264413 chr6:31229930 HLA-C [-6596bp] C - 4 T vs. C 0.233 (C) 0.217 (C) <1 (-) 27 (-) <0.05
rs28367662 chr6:31268733 HLA-C [+28826bp] C - 12 T vs. C 0.275 (C) 0.35 (C) >1 (-) 0 (-) <0.05
rs3130531 chr6:31206616 HLA-C [-29910bp] C - 12 A vs. G 0.425 (A) 0.275 (A) >1 (-) 38 (-) <0.05
rs3134768 chr6:31206844 HLA-C [-29682bp] C - 12 C vs. G 0.25 (C) 0.267 (C) <1 (-) 0 (-) <0.05
rs9264547 chr6:31234742 HLA-C [-1784bp] C - 11 C vs. G 0.233 (C) 0.233 (C) >1 (-) 14 (-) <0.05
rs3130522 chr6:31196840 HCG27 [+25095bp] C - 12 T vs. C 0.225 (C) 0.342 (C) >1 (-) 0 (-) <0.05
rs3130943 chr6:31196847 HCG27 [+25102bp] C - 12 A vs. G 0.225 (G) 0.367 (G) >1 (-) 0 (-) <0.05
rs9264242 chr6:31222584 HLA-C [-13942bp] C - 4 T vs. C - - >1 (-) 0 (-) <0.05
rs3873375 chr6:31251360 HLA-C [+11453bp] C - 12 T vs. C 0.292 (T) 0.35 (T) <1 (-) 0 (-) <0.05
rs7381988 chr6:31246703 HLA-C [+6796bp] C - 12 A vs. G 0.225 (G) 0.217 (G) <1 (-) 50 (-) <0.05
rs3130936 chr6:31198778 HCG27 [+27033bp] C - 12 T vs. C 0.25 (T) 0.292 (T) <1 (-) 0 (-) <0.05
rs9264549 chr6:31234774 HLA-C [-1752bp] C - 8 C vs. G 0.292 (C) 0.342 (C) >1 (-) 10 (-) <0.05
rs3132531 chr6:31201472 HCG27 [+29727bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs2894186 chr6:31206868 HLA-C [-29658bp] C - 12 C vs. G 0.408 (C) 0.342 (C) <1 (-) 0 (-) <0.05
rs10947158 chr6:31195616 HCG27 [+23871bp] C - 10 A vs. G - 0.125 (A) <1 (-) 0 (-) <0.05
rs28367669 chr6:31269022 HLA-C [+29115bp] C - 12 T vs. C 0.292 (C) 0.325 (C) >1 (-) 0 (-) <0.05
rs3134779 chr6:31198897 HCG27 [+27152bp] C - 12 A vs. G 0.25 (A) 0.358 (A) <1 (-) 0 (-) <0.05
rs3130529 chr6:31200433 HCG27 [+28688bp] C - 12 T vs. C 0.25 (C) 0.333 (C) >1 (-) 0 (-) <0.05
rs3132521 chr6:31202680 HCG27 [+30935bp] C - 12 T vs. C 0.25 (T) - <1 (-) 0 (-) <0.05
rs3130945 chr6:31196295 HCG27 [+24550bp] C - 12 A vs. G 0.25 (G) 0.258 (G) >1 (-) 0 (-) <0.05
rs3130530 chr6:31205392 HLA-C [-31134bp] C - 12 A vs. G 0.225 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs3130524 chr6:31197729 HCG27 [+25984bp] C - 12 T vs. C 0.25 (C) 0.4 (C) >1 (-) 0 (-) <0.05
rs2894360 chr6:31269445 HLA-C [+29538bp] C - 12 C vs. G - - <1 (-) 0 (-) <0.05
rs3130471 chr6:31197696 HCG27 [+25951bp] C - 12 T vs. G 0.25 (T) 0.375 (T) <1 (-) 0 (-) <0.05
rs28481932 chr6:31242900 HLA-C [+2993bp] C - 12 A vs. G 0.142 (G) 0.167 (G) >1 (-) 0 (-) <0.05
rs3130942 chr6:31197293 HCG27 [+25548bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 0 (-) <0.05
rs3130470 chr6:31197528 HCG27 [+25783bp] C - 12 A vs. G 0.25 (G) 0.358 (G) >1 (-) 0 (-) <0.05
rs3130713 chr6:31205617 HLA-C [-30909bp] C - 12 T vs. G 0.25 (T) 0.267 (T) <1 (-) 0 (-) <0.05
rs3130523 chr6:31197074 HCG27 [+25329bp] C - 12 T vs. C 0.25 (T) 0.317 (T) <1 (-) 0 (-) <0.05
rs3134777 chr6:31199900 HCG27 [+28155bp] C - 12 A vs. G 0.25 (A) 0.292 (A) <1 (-) 0 (-) <0.05
rs2894359 chr6:31269443 HLA-C [+29536bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs2074491 chr6:31239896 HLA-C C - 10 T vs. C 0.133 (C) 0.233 (C) >1 (-) 30 (-) <0.05
rs3130938 chr6:31198632 HCG27 [+26887bp] C - 12 T vs. G 0.25 (G) 0.383 (G) >1 (-) 0 (-) <0.05
rs3134778 chr6:31199781 HCG27 [+28036bp] C - 12 A vs. G 0.25 (A) - <1 (-) 0 (-) <0.05
rs7750854 chr6:31271216 HLA-C [+31309bp] C - 11 T vs. G 0.175 (T) 0.325 (T) <1 (-) 0 (-) <0.05
rs3130937 chr6:31198660 HCG27 [+26915bp] C - 12 A vs. G 0.25 (G) 0.275 (G) >1 (-) 0 (-) <0.05
rs3095251 chr6:31195095 HCG27 [+23350bp] C - 12 A vs. T 0.25 (A) 0.233 (A) <1 (-) 0 (-) <0.05
rs28367628 chr6:31267869 HLA-C [+27962bp] C - 12 A vs. T 0.292 (A) 0.358 (A) <1 (-) 0 (-) <0.05
rs28367670 chr6:31269032 HLA-C [+29125bp] C - 12 A vs. G 0.292 (A) 0.333 (A) <1 (-) 0 (-) <0.05
rs3132495 chr6:31208881 HLA-C [-27645bp] C - 12 A vs. T 0.225 (A) 0.175 (A) <1 (-) 0 (-) <0.05
rs3130944 chr6:31196671 HCG27 [+24926bp] C - 12 C vs. G 0.25 (G) 0.283 (G) >1 (-) 0 (-) <0.05
rs3132486 chr6:31243170 HLA-C [+3263bp] C - 12 A vs. G 0.45 (G) 0.375 (G) <1 (-) 0 (-) <0.05
rs73728489 chr6:31232125 HLA-C [-4401bp] C - 5 T vs. C 0.017 (T) - >1 (-) 0 (-) <0.05
rs77211522 chr6:31232030 HLA-C [-4496bp] C - 5 T vs. C - - >1 (-) 0 (-) <0.05
rs9468937 chr6:31270118 HLA-C [+30211bp] C - 12 A vs. C 0.358 (A) 0.4 (A) <1 (-) 17 (-) <0.05
rs28367629 chr6:31267905 HLA-C [+27998bp] C - 12 T vs. C 0.3 (T) 0.358 (T) <1 (-) 0 (-) <0.05
rs28520918 chr6:31275846 HLA-C [+35939bp] C - 11 A vs. C 0.05 (A) 0.35 (A) <1 (-) 18 (-) <0.05
rs28367605 chr6:31266927 HLA-C [+27020bp] C - 12 C vs. G 0.2 (C) - <1 (-) 0 (-) <0.05
rs28367671 chr6:31269066 HLA-C [+29159bp] C - 12 T vs. C 0.292 (T) 0.342 (T) <1 (-) 0 (-) <0.05

Association studies for this region [+]