HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3095247 chr6:31209389 HLA-C [-27137bp] C - 12 A vs. G - - <1 (-) 51 (-) <0.05
rs12525626 chr6:31241700 HLA-C [+1793bp] C - 12 T vs. C - - >1 (-) 35 (-) <0.05
rs9380232 chr6:31242741 HLA-C [+2834bp] C - 12 T vs. C 0.033 (C) 0.258 (C) >1 (-) 36 (-) <0.05
rs3130517 chr6:31190303 HCG27 [+18558bp] C - 12 T vs. C 0.258 (C) 0.392 (C) >1 (-) 8 (-) <0.05
rs9295968 chr6:31243092 HLA-C [+3185bp] C - 12 T vs. C - - >1 (-) 36 (-) <0.05
rs9717841 chr6:31275485 HLA-C [+35578bp] C - 11 T vs. C 0.075 (T) 0.333 (T) <1 (-) 17 (-) <0.05
rs12660083 chr6:31251523 HLA-C [+11616bp] C - 12 T vs. C - - >1 (-) 23 (-) <0.05
rs28367615 chr6:31267212 HLA-C [+27305bp] C - 12 T vs. G - - <1 (-) 0 (-) <0.05
rs75214491 chr6:31247097 HLA-C [+7190bp] C - 12 T vs. C 0.033 (C) 0.05 (C) <1 (-) 30 (-) <0.05
rs28367614 chr6:31267207 HLA-C [+27300bp] C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs58490916 chr6:31270386 HLA-C [+30479bp] C - 12 T vs. C 0.058 (C) - <1 (-) 0 (-) <0.05
rs9264185 chr6:31219982 HLA-C [-16544bp] C - 10 A vs. G 0.267 (A) 0.167 (A) <1 (-) 0 (-) <0.05
rs2394886 chr6:31194677 HCG27 [+22932bp] C - 12 A vs. G 0.225 (A) - <1 (-) 0 (-) >0.05
rs116506047 chr6:31220440 HLA-C [-16086bp] C - 6 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs28615506 chr6:31275691 HLA-C [+35784bp] C - 11 A vs. C 0.05 (C) 0.35 (C) >1 (-) 18 (-) >0.05
rs3130949 chr6:31191867 HCG27 [+20122bp] C - 12 T vs. C - 0.125 (T) <1 (-) 0 (-) >0.05
rs2524105 chr6:31232910 HLA-C [-3616bp] C - 7 C vs. G 0.408 (C) 0.358 (G) <1 (-) 43 (-) >0.05
rs7750269 chr6:31271157 HLA-C [+31250bp] C - 11 A vs. G 0.075 (G) 0.267 (G) >1 (-) 18 (-) >0.05
rs35192021 chr6:31269219 HLA-C [+29312bp] C - 10 T vs. C 0.067 (T) 0.025 (T) <1 (-) 27 (-) >0.05
rs2394944 chr6:31220450 HLA-C [-16076bp] C - 10 T vs. C 0.225 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs9264946 chr6:31274634 HLA-C [+34727bp] C - 11 T vs. C 0.2 (C) 0.342 (C) >1 (-) 0 (-) >0.05
rs9394057 chr6:31273692 HLA-C [+33785bp] C - 11 A vs. G 0.075 (G) 0.267 (G) >1 (-) 13 (-) >0.05
rs3130467 chr6:31187075 HCG27 [+15330bp] C - 12 T vs. C 0.258 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs2524110 chr6:31231947 HLA-C [-4579bp] C - 6 A vs. G - - <1 (-) 46 (-) >0.05
rs9264765 chr6:31249478 HLA-C [+9571bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs28367597 chr6:31260262 HLA-C [+20355bp] C - 12 C vs. G 0.267 (G) 0.267 (G) >1 (-) 0 (-) >0.05
rs2394941 chr6:31220273 HLA-C [-16253bp] C - 10 A vs. T 0.208 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs11962586 chr6:31271703 HLA-C [+31796bp] C - 11 A vs. T 0.067 (T) - >1 (-) 22 (-) >0.05
rs3134770 chr6:31204986 HLA-C [-31540bp] C - 12 T vs. C - - >1 (-) 42 (-) >0.05
rs113563747 chr6:31210259 HLA-C [-26267bp] C - 4 A vs. G - - >1 (-) 25 (-) >0.05
rs35028179 chr6:31241721 HLA-C [+1814bp] C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs12234123 chr6:31243604 HLA-C [+3697bp] C - 12 A vs. G 0.042 (A) 0.242 (A) <1 (-) 34 (-) >0.05
rs2253487 chr6:31249127 HLA-C [+9220bp] C - 12 A vs. G 0.325 (A) 0.317 (A) <1 (-) 0 (-) >0.05
rs2853941 chr6:31249229 HLA-C [+9322bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs13194791 chr6:31275277 HLA-C [+35370bp] C - 11 A vs. G 0.125 (G) 0.375 (G) >1 (-) 18 (-) >0.05
rs6899872 chr6:31272644 HLA-C [+32737bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs9264764 chr6:31249398 HLA-C [+9491bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28397299 chr6:31207704 HLA-C [-28822bp] C - 12 A vs. G 0.158 (A) 0.233 (A) <1 (-) 27 (-) >0.05
rs2394890 chr6:31205229 HLA-C [-31297bp] C - 12 A vs. G 0.4 (A) 0.5 (A) <1 (-) 0 (-) >0.05
rs6457350 chr6:31204109 HCG27 [+32364bp] C - 12 T vs. C 0.175 (C) 0.242 (C) >1 (-) 27 (-) >0.05
rs28397297 chr6:31206948 HLA-C [-29578bp] C - 12 T vs. C 0.175 (T) 0.233 (T) <1 (-) 27 (-) >0.05
rs34622008 chr6:31240814 HLA-C [+907bp] C - 11 T vs. C 0.117 (T) 0.225 (T) <1 (-) 22 (-) >0.05
rs35857242 chr6:31253121 HLA-C [+13214bp] C - 12 T vs. C 0.125 (C) 0.133 (C) >1 (-) 11 (-) >0.05
rs3868081 chr6:31206138 HLA-C [-30388bp] C - 12 C vs. G 0.175 (C) 0.233 (C) <1 (-) 27 (-) >0.05
rs6906721 chr6:31270047 HLA-C [+30140bp] C - 12 A vs. G 0.092 (G) 0.258 (G) <1 (-) 49 (-) >0.05
rs72502555 chr6:31234208 HLA-C [-2318bp] C - 3 C vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs3134762 chr6:31210866 HLA-C [-25660bp] C - 11 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs35976302 chr6:31241077 HLA-C [+1170bp] C - 12 T vs. C - - >1 (-) 17 (-) >0.05
rs3869117 chr6:31205923 HLA-C [-30603bp] C - 12 C vs. G 0.175 (G) 0.233 (G) >1 (-) 27 (-) >0.05
rs7761496 chr6:31273324 HLA-C [+33417bp] C - 12 T vs. C 0.225 (T) 0.358 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]