HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28367622 chr6:31267515 HLA-C [+27608bp] All: C 103,235 14 A vs. G 0.292 (A) 0.317 (A) 0.93 (0.89-0.96) 0 (0-52) 8.71e-05
rs11962994 chr6:31219289 HLA-C [-17237bp] All: C 83,652 9 A vs. G 0.175 (A) 0.233 (A) 0.87 (0.81-0.93) 43 (0-74) 8.72e-05
rs9468920 chr6:31254936 HLA-C [+15029bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.97) 0 (0-53) 8.87e-05
rs7754443 chr6:31254263 HLA-C [+14356bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.97) 0 (0-53) 8.93e-05
rs3906269 chr6:31258968 HLA-C [+19061bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.97) 0 (0-53) 8.97e-05
rs3873374 chr6:31251311 HLA-C [+11404bp] All: C 103,235 14 C vs. T 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-54) 9.02e-05
rs28367587 chr6:31250978 HLA-C [+11071bp] All: C 103,235 14 A vs. G 0.292 (A) 0.35 (A) 0.93 (0.90-0.97) 0 (0-54) 9.11e-05
rs28367588 chr6:31251003 HLA-C [+11096bp] All: C 103,235 14 A vs. G 0.292 (A) 0.333 (A) 0.93 (0.90-0.97) 0 (0-54) 9.11e-05
rs9468917 chr6:31250918 HLA-C [+11011bp] All: C 103,235 14 T vs. C 0.292 (T) 0.35 (T) 0.93 (0.90-0.97) 0 (0-54) 9.12e-05
rs28367623 chr6:31267516 HLA-C [+27609bp] All: C 103,235 14 C vs. T 0.292 (C) 0.325 (C) 0.93 (0.89-0.96) 0 (0-52) 9.14e-05
rs28367663 chr6:31268767 HLA-C [+28860bp] All: C 103,235 14 C vs. A 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-52) 9.20e-05
rs28367635 chr6:31268020 HLA-C [+28113bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 0 (0-50) 9.23e-05
rs28367664 chr6:31268817 HLA-C [+28910bp] All: C 103,235 14 C vs. A 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-52) 9.29e-05
rs28367601 chr6:31266561 HLA-C [+26654bp] All: C 103,235 14 C vs. A 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-51) 9.46e-05
rs28367599 chr6:31266458 HLA-C [+26551bp] All: C 103,235 14 C vs. T 0.292 (C) 0.35 (C) 0.93 (0.90-0.97) 0 (0-51) 9.48e-05
rs28367608 chr6:31267007 HLA-C [+27100bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.14) 0 (0-55) 9.51e-05
rs28367611 chr6:31267081 HLA-C [+27174bp] All: C 103,235 14 C vs. T 0.25 (C) - 0.92 (0.89-0.96) 0 (0-55) 9.53e-05
rs28749561 chr6:31217711 HLA-C [-18815bp] All: C 84,098 10 C vs. T 0.175 (C) 0.217 (C) 0.88 (0.82-0.94) 34 (0-68) 9.55e-05
rs28367627 chr6:31267812 HLA-C [+27905bp] All: C 103,235 14 G vs. A 0.3 (G) 0.358 (G) 0.93 (0.90-0.97) 0 (0-52) 9.79e-05
rs28367621 chr6:31267398 HLA-C [+27491bp] All: C 103,235 14 G vs. A - - 1.10 (1.05-1.15) 10 (0-48) 9.80e-05
rs28367606 chr6:31266928 HLA-C [+27021bp] All: C 103,235 14 A vs. G 0.192 (A) - 0.91 (0.87-0.96) 5 (0-57) 1.01e-04
rs28367607 chr6:31266932 HLA-C [+27025bp] All: C 103,235 14 C vs. T 0.225 (C) - 0.91 (0.87-0.96) 5 (0-57) 1.01e-04
rs28367667 chr6:31268987 HLA-C [+29080bp] All: C 103,235 14 T vs. C 0.292 (T) 0.317 (T) 0.93 (0.89-0.96) 0 (0-54) 1.01e-04
rs28367668 chr6:31268993 HLA-C [+29086bp] All: C 103,235 14 G vs. A 0.283 (G) 0.317 (G) 0.93 (0.89-0.96) 0 (0-54) 1.01e-04
rs28367618 chr6:31267325 HLA-C [+27418bp] All: C 103,235 14 C vs. T - - 1.09 (1.04-1.13) 4 (0-57) 1.02e-04
rs28367641 chr6:31268271 HLA-C [+28364bp] All: C 103,235 14 T vs. C 0.283 (T) 0.358 (T) 0.93 (0.90-0.97) 0 (0-52) 1.02e-04
rs28367666 chr6:31268982 HLA-C [+29075bp] All: C 103,235 14 T vs. C 0.292 (T) 0.317 (T) 0.93 (0.89-0.96) 0 (0-54) 1.03e-04
rs28367624 chr6:31267714 HLA-C [+27807bp] All: C 103,235 14 A vs. G - - 1.07 (1.04-1.11) 0 (0-53) 1.06e-04
rs28367626 chr6:31267747 HLA-C [+27840bp] All: C 103,235 14 C vs. T 0.283 (C) 0.358 (C) 0.93 (0.90-0.97) 0 (0-53) 1.06e-04
rs16899213 chr6:31268142 HLA-C [+28235bp] All: C 103,235 14 T vs. C 0.292 (T) 0.358 (T) 0.93 (0.90-0.97) 0 (0-52) 1.07e-04
rs28367650 chr6:31268530 HLA-C [+28623bp] All: C 103,235 14 T vs. C 0.292 (T) 0.35 (T) 0.93 (0.90-0.97) 0 (0-53) 1.07e-04
rs28367654 chr6:31268581 HLA-C [+28674bp] All: C 103,235 14 C vs. T 0.292 (C) 0.325 (C) 0.93 (0.89-0.96) 0 (0-52) 1.07e-04
rs28367655 chr6:31268582 HLA-C [+28675bp] All: C 103,235 14 A vs. G 0.292 (A) 0.325 (A) 0.93 (0.89-0.96) 0 (0-52) 1.07e-04
rs28367681 chr6:31269440 HLA-C [+29533bp] All: C 103,235 14 C vs. T - - 1.10 (1.05-1.15) 6 (0-58) 1.07e-04
rs28367630 chr6:31267934 HLA-C [+28027bp] All: C 103,235 14 G vs. A 0.292 (G) 0.342 (G) 0.93 (0.90-0.97) 0 (0-51) 1.10e-04
rs28367631 chr6:31267936 HLA-C [+28029bp] All: C 103,235 14 T vs. C 0.292 (T) 0.333 (T) 0.93 (0.90-0.97) 0 (0-51) 1.10e-04
rs3909124 chr6:31263657 HLA-C [+23750bp] All: C 103,235 14 T vs. G 0.292 (T) 0.35 (T) 0.93 (0.90-0.97) 0 (0-54) 1.10e-04
rs28367677 chr6:31269281 HLA-C [+29374bp] All: C 103,235 14 T vs. C 0.292 (T) 0.342 (T) 0.93 (0.90-0.97) 1 (0-56) 1.11e-04
rs12110912 chr6:31263909 HLA-C [+24002bp] All: C 103,235 14 A vs. C 0.267 (A) 0.258 (A) 0.93 (0.90-0.97) 0 (0-54) 1.14e-04
rs3873380 chr6:31262438 HLA-C [+22531bp] All: C 103,235 14 T vs. C 0.308 (T) 0.358 (T) 0.94 (0.90-0.97) 19 (0-56) 1.16e-04
rs28367639 chr6:31268081 HLA-C [+28174bp] All: C 103,235 14 C vs. T 0.292 (C) 0.358 (C) 0.93 (0.90-0.97) 0 (0-52) 1.17e-04
rs1131152 - HLA-C All: C 91,935 11 A vs. C - - 1.12 (1.06-1.19) 14 (0-55) 1.19e-04
rs28367638 chr6:31268050 HLA-C [+28143bp] All: C 103,235 14 A vs. G 0.292 (A) 0.358 (A) 0.93 (0.90-0.97) 0 (0-51) 1.20e-04
rs28367616 chr6:31267253 HLA-C [+27346bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.13) 4 (0-57) 1.22e-04
rs28367673 chr6:31269215 HLA-C [+29308bp] All: C 103,235 14 C vs. A 0.292 (C) 0.342 (C) 0.93 (0.90-0.97) 0 (0-51) 1.25e-04
rs28367617 chr6:31267273 HLA-C [+27366bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.13) 8 (0-45) 1.30e-04
rs9468918 chr6:31251662 HLA-C [+11755bp] All: C 103,235 14 T vs. C - - 1.10 (1.05-1.15) 0 (0-52) 1.30e-04
rs9264873 chr6:31271700 HLA-C [+31793bp] All: C 103,235 14 T vs. C 0.433 (T) 0.283 (T) 1.07 (1.03-1.10) 2 (0-56) 1.44e-04
rs28367591 chr6:31253097 HLA-C [+13190bp] All: C 103,235 14 A vs. G 0.267 (A) 0.242 (A) 0.93 (0.90-0.97) 4 (0-57) 1.45e-04
rs4543367 chr6:31266767 HLA-C [+26860bp] All: C 103,235 14 A vs. G 0.292 (A) 0.325 (A) 0.93 (0.89-0.96) 0 (0-54) 1.46e-04

Association studies for this region [+]