HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76606056 chr6:31186839 HCG27 [+15094bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs114093160 chr6:31258371 HLA-C [+18464bp] C - 12 A vs. G 0.067 (A) 0.117 (A) >1 (-) 21 (-) >0.05
rs28397307 chr6:31233651 HLA-C [-2875bp] C - 4 A vs. G 0.042 (A) - <1 (-) 0 (-) >0.05
rs76530868 chr6:31275410 HLA-C [+35503bp] C - 8 A vs. C 0.042 (A) 0.158 (A) <1 (-) 31 (-) >0.05
rs17192505 chr6:31265910 HLA-C [+26003bp] C - 12 T vs. G 0.067 (G) 0.117 (G) <1 (-) 24 (-) >0.05
rs17192512 chr6:31265914 HLA-C [+26007bp] C - 12 A vs. G 0.058 (G) 0.092 (G) <1 (-) 24 (-) >0.05
rs7739334 chr6:31200641 HCG27 [+28896bp] C - 12 T vs. C - 0.033 (C) <1 (-) 0 (-) >0.05
rs28397308 chr6:31234135 HLA-C [-2391bp] C - 4 T vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs17192491 chr6:31265788 HLA-C [+25881bp] C - 12 C vs. G 0.067 (G) 0.117 (G) <1 (-) 23 (-) >0.05
rs17198818 chr6:31265695 HLA-C [+25788bp] C - 12 A vs. G 0.067 (A) 0.1 (A) >1 (-) 23 (-) >0.05
rs115754657 chr6:31259723 HLA-C [+19816bp] C - 11 A vs. G 0.033 (A) 0.017 (A) <1 (-) 0 (-) >0.05
rs17198811 chr6:31265634 HLA-C [+25727bp] C - 12 T vs. C 0.067 (T) 0.117 (T) >1 (-) 23 (-) >0.05
rs114973736 chr6:31264497 HLA-C [+24590bp] C - 12 T vs. C 0.067 (C) 0.108 (C) <1 (-) 23 (-) >0.05
rs28397309 chr6:31234438 HLA-C [-2088bp] C - 4 A vs. C 0.042 (C) - >1 (-) 0 (-) >0.05
rs2253288 chr6:31247270 HLA-C [+7363bp] C - 12 A vs. G 0.233 (A) 0.125 (A) <1 (-) 0 (-) >0.05
rs9366775 chr6:31240096 HLA-C [+189bp] C - 9 A vs. G - 0.125 (A) <1 (-) 25 (-) >0.05
rs2894182 chr6:31194475 HCG27 [+22730bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9264041 chr6:31196758 HCG27 [+25013bp] C - 12 A vs. G 0.008 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs28744276 chr6:31201206 HCG27 [+29461bp] C - 12 A vs. G - - <1 (-) 28 (-) >0.05
rs2524130 chr6:31226591 HLA-C [-9935bp] C - 3 T vs. C - - <1 (-) 43 (-) >0.05
rs9264935 chr6:31274244 HLA-C [+34337bp] C - 11 C vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs114351289 chr6:31232729 HLA-C [-3797bp] C - 4 T vs. G 0.042 (T) - <1 (-) 0 (-) >0.05
rs137891501 chr6:31199790 HCG27 [+28045bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs17191559 chr6:31221485 HLA-C [-15041bp] C - 4 A vs. C 0.083 (C) 0.15 (C) <1 (-) 51 (-) >0.05
rs115975714 chr6:31265242 HLA-C [+25335bp] C - 12 T vs. G 0.067 (G) 0.117 (G) <1 (-) 23 (-) >0.05
rs17198839 chr6:31265807 HLA-C [+25900bp] C - 12 A vs. C 0.067 (C) 0.117 (C) <1 (-) 27 (-) >0.05
rs115700453 chr6:31264577 HLA-C [+24670bp] C - 12 T vs. C 0.067 (C) 0.117 (C) <1 (-) 24 (-) >0.05
rs116891487 chr6:31214434 HLA-C [-22092bp] C - 4 C vs. G - 0.067 (C) >1 (-) 26 (-) >0.05
rs17192470 chr6:31265743 HLA-C [+25836bp] C - 12 T vs. C 0.067 (T) 0.1 (T) >1 (-) 26 (-) >0.05
rs3134775 chr6:31201357 HCG27 [+29612bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs115753074 chr6:31265168 HLA-C [+25261bp] C - 12 A vs. G 0.067 (A) 0.1 (A) >1 (-) 23 (-) >0.05
rs28744275 chr6:31200557 HCG27 [+28812bp] C - 12 A vs. G 0.117 (A) - <1 (-) 27 (-) >0.05
rs28361024 chr6:31208733 HLA-C [-27793bp] C - 12 A vs. G 0.125 (A) - <1 (-) 28 (-) >0.05
rs59810420 chr6:31195269 HCG27 [+23524bp] C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs1634794 chr6:31276314 HLA-C [+36407bp] C - 11 T vs. G 0.425 (T) 0.225 (T) >1 (-) 18 (-) >0.05
rs114770325 chr6:31264845 HLA-C [+24938bp] C - 12 T vs. C 0.067 (C) 0.117 (C) <1 (-) 24 (-) >0.05
rs3134776 chr6:31200814 HCG27 [+29069bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs56409019 chr6:31261358 HLA-C [+21451bp] C - 12 C vs. G 0.058 (G) 0.117 (G) <1 (-) 24 (-) >0.05
rs55793836 chr6:31261393 HLA-C [+21486bp] C - 12 T vs. C 0.058 (T) 0.117 (T) >1 (-) 24 (-) >0.05
rs57833738 chr6:31191509 HCG27 [+19764bp] C - 12 T vs. C - 0.067 (T) >1 (-) 0 (-) >0.05
rs9264942 chr6:31274380 HLA-C [+34473bp] C - 11 T vs. C 0.308 (C) 0.342 (C) <1 (-) 0 (-) >0.05
rs17192631 chr6:31276412 HLA-C [+36505bp] C - 10 A vs. G 0.092 (A) 0.392 (A) <1 (-) 36 (-) >0.05
rs59101659 chr6:31254054 HLA-C [+14147bp] C - 10 A vs. G - - >1 (-) 33 (-) >0.05
rs9366772 chr6:31229338 HLA-C [-7188bp] C - 3 A vs. G 0.083 (A) 0.233 (A) >1 (-) 53 (-) >0.05
rs56138398 chr6:31269299 HLA-C [+29392bp] C - 12 C vs. G 0.067 (C) 0.1 (C) >1 (-) 6 (-) >0.05
rs146793554 chr6:31191279 HCG27 [+19534bp] C - 12 T vs. C - - >1 (-) 11 (-) >0.05
rs6900458 chr6:31241207 HLA-C [+1300bp] C - 12 T vs. C - - >1 (-) 45 (-) >0.05
rs3864297 chr6:31235655 HLA-C [-871bp] C - 4 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs3130699 chr6:31200816 HCG27 [+29071bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs9264127 chr6:31211592 HLA-C [-24934bp] C - 11 C vs. G - 0.017 (G) <1 (-) 0 (-) >0.05

Association studies for this region [+]