HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3828860 chr6:31265736 HLA-C [+25829bp] C - 12 T vs. C 0.067 (T) 0.1 (T) >1 (-) 30 (-) >0.05
rs3873372 chr6:31235798 HLA-C [-728bp] C - 4 T vs. G 0.033 (T) - <1 (-) 0 (-) >0.05
rs34504767 chr6:31261492 HLA-C [+21585bp] C - 12 T vs. C 0.058 (T) 0.117 (T) >1 (-) 25 (-) >0.05
rs3134745 chr6:31242762 HLA-C [+2855bp] C - 12 T vs. C 0.308 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs28367569 chr6:31236102 HLA-C [-424bp] C - 4 T vs. C 0.042 (C) - >1 (-) 0 (-) >0.05
rs2844630 chr6:31228084 HLA-C [-8442bp] C - 3 T vs. G 0.183 (T) - <1 (-) 44 (-) >0.05
rs56194989 chr6:31203153 HCG27 [+31408bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs28367568 chr6:31235408 HLA-C [-1118bp] C - 4 A vs. C 0.042 (A) - <1 (-) 0 (-) >0.05
rs17198909 chr6:31266189 HLA-C [+26282bp] C - 12 A vs. T 0.067 (T) 0.133 (T) <1 (-) 23 (-) >0.05
rs147710409 chr6:31258386 HLA-C [+18479bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs138608904 chr6:31267184 HLA-C [+27277bp] C - 3 T vs. G - - >1 (-) 0 (-) >0.05
rs28367570 chr6:31236298 HLA-C [-228bp] C - 4 C vs. G 0.042 (C) - <1 (-) 0 (-) >0.05
rs114472942 chr6:31236289 HLA-C [-237bp] C - 4 A vs. C 0.042 (A) - <1 (-) 0 (-) >0.05
rs111417879 chr6:31235152 HLA-C [-1374bp] C - 3 T vs. C 0.008 (T) - >1 (-) 0 (-) >0.05
rs7773175 chr6:31240959 HLA-C [+1052bp] C - 12 C vs. G 0.25 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs9264839 chr6:31270949 HLA-C [+31042bp] C - 12 T vs. C 0.158 (T) 0.192 (T) >1 (-) 17 (-) >0.05
rs2428535 chr6:31228214 HLA-C [-8312bp] C - 3 T vs. C 0.242 (T) - <1 (-) 44 (-) >0.05
rs35045183 chr6:31240082 HLA-C [+175bp] C - 7 T vs. C - - >1 (-) 50 (-) >0.05
rs9264669 chr6:31239681 HLA-C C - 3 A vs. T - - >1 (-) 31 (-) >0.05
rs3130444 chr6:31228634 HLA-C [-7892bp] C - 3 T vs. C 0.225 (C) 0.058 (C) >1 (-) 46 (-) >0.05
rs59057661 chr6:31240091 HLA-C [+184bp] C - 7 A vs. T - - >1 (-) 49 (-) >0.05
rs9348864 chr6:31265855 HLA-C [+25948bp] C - 12 T vs. C 0.017 (C) 0.158 (C) >1 (-) 21 (-) >0.05
rs3130443 chr6:31228600 HLA-C [-7926bp] C - 3 T vs. C - - <1 (-) 45 (-) >0.05
rs115731335 chr6:31215975 HLA-C [-20551bp] C - 4 A vs. T 0.025 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs148640551 chr6:31188467 HCG27 [+16722bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs7746123 chr6:31204334 HLA-C [-32192bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs17879162 chr6:31237257 HLA-C C - 4 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs116763255 chr6:31264891 HLA-C [+24984bp] C - 11 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs114027487 chr6:31236571 HLA-C C - 4 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs17192526 chr6:31266041 HLA-C [+26134bp] C - 12 T vs. C 0.408 (C) 0.45 (C) >1 (-) 0 (-) >0.05
rs2844627 chr6:31229462 HLA-C [-7064bp] C - 3 T vs. C 0.233 (T) 0.058 (T) <1 (-) 47 (-) >0.05
rs139076003 chr6:31269556 HLA-C [+29649bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs9501561 chr6:31236160 HLA-C [-366bp] C - 8 A vs. T - - <1 (-) 0 (-) >0.05
rs3176007 chr6:31236845 HLA-C C - 4 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs115773168 chr6:31269430 HLA-C [+29523bp] C - 11 T vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs9468936 chr6:31269884 HLA-C [+29977bp] C - 12 T vs. G 0.342 (G) 0.35 (G) >1 (-) 11 (-) >0.05
rs3931670 chr6:31243767 HLA-C [+3860bp] C - 12 C vs. G 0.217 (C) 0.15 (C) >1 (-) 0 (-) >0.05
rs1634761 chr6:31274027 HLA-C [+34120bp] C - 11 T vs. C 0.475 (T) 0.3 (C) <1 (-) 16 (-) >0.05
rs28361028 chr6:31218038 HLA-C [-18488bp] C - 8 T vs. C 0.158 (C) - >1 (-) 0 (-) >0.05
rs28744278 chr6:31214867 HLA-C [-21659bp] C - 9 A vs. C 0.167 (C) - >1 (-) 0 (-) >0.05
rs28744281 chr6:31216341 HLA-C [-20185bp] C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs28361018 chr6:31197721 HCG27 [+25976bp] C - 12 T vs. C 0.142 (C) - >1 (-) 0 (-) >0.05
rs9468932 chr6:31264823 HLA-C [+24916bp] C - 12 A vs. G 0.133 (A) 0.183 (A) >1 (-) 0 (-) >0.05
rs9264914 chr6:31272704 HLA-C [+32797bp] C - 11 T vs. C 0.142 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs115533686 chr6:31266106 HLA-C [+26199bp] C - 11 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs17191510 chr6:31221284 HLA-C [-15242bp] C - 5 A vs. G 0.108 (A) 0.025 (A) <1 (-) 0 (-) >0.05
rs116905289 chr6:31191013 HCG27 [+19268bp] C - 6 A vs. G - 0.067 (A) <1 (-) 0 (-) >0.05
rs9264086 chr6:31201684 HCG27 [+29939bp] C - 12 A vs. G 0.417 (A) 0.425 (A) >1 (-) 10 (-) >0.05
rs28744279 chr6:31215355 HLA-C [-21171bp] C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs17884390 chr6:31238495 HLA-C C - 3 A vs. G 0.042 (A) - <1 (-) 0 (-) >0.05

Association studies for this region [+]