HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12174774 chr6:31268965 HLA-C [+29058bp] C - 12 T vs. C 0.083 (T) 0.292 (T) <1 (-) 16 (-) >0.05
rs364415 chr6:31273224 HLA-C [+33317bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9264907 chr6:31272611 HLA-C [+32704bp] C - 12 T vs. C 0.117 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs28894988 chr6:31264303 HLA-C [+24396bp] C - 11 T vs. G 0.125 (T) 0.183 (T) >1 (-) 0 (-) >0.05
rs9264892 chr6:31272199 HLA-C [+32292bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs28361005 chr6:31190085 HCG27 [+18340bp] C - 12 A vs. T - - <1 (-) 0 (-) >0.05
rs28894987 chr6:31264302 HLA-C [+24395bp] C - 11 A vs. C 0.125 (C) 0.183 (C) <1 (-) 0 (-) >0.05
rs28361009 chr6:31191065 HCG27 [+19320bp] C - 12 A vs. G 0.15 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs3906273 chr6:31262923 HLA-C [+23016bp] C - 12 A vs. G 0.15 (A) 0.158 (A) >1 (-) 0 (-) >0.05
rs28361010 chr6:31191510 HCG27 [+19765bp] C - 12 T vs. C 0.133 (T) - <1 (-) 0 (-) >0.05
rs9264905 chr6:31272559 HLA-C [+32652bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28361012 chr6:31191802 HCG27 [+20057bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs3132536 chr6:31200437 HCG27 [+28692bp] C - 12 A vs. G 0.467 (G) 0.475 (G) >1 (-) 0 (-) >0.05
rs28361013 chr6:31191826 HCG27 [+20081bp] C - 12 T vs. C 0.15 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs9264856 chr6:31271463 HLA-C [+31556bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs2524134 chr6:31264812 HLA-C [+24905bp] C - 12 A vs. T 0.15 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs28360996 chr6:31188621 HCG27 [+16876bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs56229131 chr6:31233675 HLA-C [-2851bp] C - 7 A vs. G 0.05 (G) 0.15 (G) >1 (-) 26 (-) >0.05
rs9264847 chr6:31271140 HLA-C [+31233bp] C - 12 C vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs28361022 chr6:31205812 HLA-C [-30714bp] C - 12 T vs. C 0.083 (C) - >1 (-) 27 (-) >0.05
rs9264897 chr6:31272393 HLA-C [+32486bp] C - 12 A vs. C 0.142 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs9264883 chr6:31271894 HLA-C [+31987bp] C - 12 A vs. G 0.15 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs9264898 chr6:31272396 HLA-C [+32489bp] C - 12 T vs. C 0.142 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs28367691 chr6:31279997 HLA-C [+40090bp] C - 5 T vs. C 0.05 (C) - >1 (-) 0 (-) >0.05
rs9264951 chr6:31275100 HLA-C [+35193bp] C - 12 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs2508005 chr6:31273582 HLA-C [+33675bp] C - 12 A vs. G 0.15 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs2508004 chr6:31273595 HLA-C [+33688bp] C - 12 T vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs9264912 chr6:31272678 HLA-C [+32771bp] C - 12 C vs. G 0.117 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs9264906 chr6:31272590 HLA-C [+32683bp] C - 12 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs28894983 chr6:31263640 HLA-C [+23733bp] C - 12 T vs. C 0.15 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs9264895 chr6:31272362 HLA-C [+32455bp] C - 12 A vs. T 0.15 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs2524115 chr6:31265554 HLA-C [+25647bp] C - 12 A vs. C 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9264910 chr6:31272648 HLA-C [+32741bp] C - 12 A vs. C 0.125 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs9264913 chr6:31272686 HLA-C [+32779bp] C - 12 T vs. C 0.117 (C) - >1 (-) 0 (-) >0.05
rs28361006 chr6:31190898 HCG27 [+19153bp] C - 12 T vs. C 0.142 (C) 0.125 (C) >1 (-) 0 (-) >0.05
rs28361007 chr6:31190931 HCG27 [+19186bp] C - 12 A vs. G 0.142 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs28361008 chr6:31190977 HCG27 [+19232bp] C - 12 A vs. C 0.142 (A) - <1 (-) 0 (-) >0.05
rs28361004 chr6:31189968 HCG27 [+18223bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs145080427 chr6:31275396 HLA-C [+35489bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs2853948 chr6:31245573 HLA-C [+5666bp] C - 12 C vs. G 0.15 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs28361003 chr6:31189798 HCG27 [+18053bp] C - 12 T vs. C 0.142 (T) - <1 (-) 0 (-) >0.05
rs9264875 chr6:31271735 HLA-C [+31828bp] C - 12 C vs. G 0.15 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs9264848 chr6:31271195 HLA-C [+31288bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9264902 chr6:31272506 HLA-C [+32599bp] C - 12 T vs. C 0.158 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs114722554 chr6:31243063 HLA-C [+3156bp] C - 11 T vs. G 0.033 (T) - <1 (-) 1 (-) >0.05
rs2524061 chr6:31248785 HLA-C [+8878bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs9264850 chr6:31271240 HLA-C [+31333bp] C - 12 A vs. G 0.15 (G) 0.108 (G) >1 (-) 0 (-) >0.05
rs28744266 chr6:31188450 HCG27 [+16705bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9264800 chr6:31270395 HLA-C [+30488bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs393225 chr6:31273268 HLA-C [+33361bp] C - 12 A vs. G 0.15 (G) 0.1 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]