HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
rs9275325 chr6:32666651 HLA-DQB1 [+30491bp] All: C 99,286 13 T vs. G 0.167 (T) 0.058 (T) 0.80 (0.75-0.85) 2 (0-58) 5.83e-13
rs9275311 chr6:32665640 HLA-DQB1 [+29480bp] All: C 103,235 14 T vs. G 0.175 (T) 0.083 (T) 0.82 (0.78-0.87) 0 (0-51) 1.51e-12
rs9275324 chr6:32666635 HLA-DQB1 [+30475bp] All: C 103,235 14 T vs. C 0.175 (T) 0.083 (T) 0.82 (0.77-0.87) 0 (0-51) 1.81e-12
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
rs9275583 chr6:32680299 HLA-DQA2 [-28820bp] All: C 99,286 13 A vs. G 0.175 (A) 0.083 (A) 0.82 (0.78-0.87) 2 (0-58) 2.11e-12
rs9275334 chr6:32667107 HLA-DQB1 [+30947bp] All: C 103,235 14 C vs. T 0.183 (C) 0.083 (C) 0.82 (0.78-0.87) 0 (0-50) 2.29e-12
rs4273728 chr6:32678491 HLA-DQA2 [-30628bp] All: C 99,286 13 C vs. T 0.15 (C) 0.083 (C) 0.82 (0.78-0.87) 3 (0-58) 2.41e-12
rs9275356 chr6:32667850 HLA-DQB1 [+31690bp] All: C 103,235 14 G vs. C 0.175 (G) 0.083 (G) 0.80 (0.75-0.85) 3 (0-56) 2.52e-12
rs3957146 chr6:32681530 HLA-DQA2 [-27589bp] All: C 99,286 13 C vs. T 0.175 (C) 0.083 (C) 0.82 (0.78-0.87) 0 (0-57) 2.94e-12
rs9275307 chr6:32664990 HLA-DQB1 [+28830bp] All: C 103,235 14 T vs. A 0.175 (T) 0.083 (T) 0.82 (0.77-0.86) 0 (0-52) 3.04e-12
rs9275592 chr6:32680620 HLA-DQA2 [-28499bp] All: C 99,286 13 T vs. G 0.175 (T) 0.083 (T) 0.82 (0.78-0.87) 3 (0-58) 3.07e-12
rs9275300 chr6:32664126 HLA-DQB1 [+27966bp] All: C 103,235 14 G vs. A 0.175 (G) 0.083 (G) 0.82 (0.77-0.86) 0 (0-52) 3.45e-12
rs9275293 chr6:32663308 HLA-DQB1 [+27148bp] All: C 103,235 14 C vs. T 0.175 (C) - 0.81 (0.77-0.86) 0 (0-52) 3.79e-12
rs9275351 chr6:32667793 HLA-DQB1 [+31633bp] All: C 103,235 14 A vs. C 0.142 (A) 0.067 (A) 0.80 (0.75-0.85) 4 (0-57) 3.81e-12
rs9275296 chr6:32663431 HLA-DQB1 [+27271bp] All: C 103,235 14 C vs. T 0.175 (C) - 0.82 (0.77-0.86) 0 (0-52) 3.85e-12
rs9275532 chr6:32675634 HLA-DQA2 [-33485bp] All: C 99,286 13 G vs. C 0.175 (G) 0.083 (G) 0.82 (0.78-0.87) 0 (0-55) 3.91e-12
rs9275541 chr6:32676159 HLA-DQA2 [-32960bp] All: C 99,286 13 G vs. C 0.175 (G) 0.058 (G) 0.82 (0.78-0.87) 0 (0-55) 4.25e-12
rs9275530 chr6:32675523 HLA-DQA2 [-33596bp] All: C 99,286 13 C vs. G 0.175 (C) 0.075 (C) 0.82 (0.78-0.87) 0 (0-55) 5.35e-12
rs9275310 chr6:32665319 HLA-DQB1 [+29159bp] All: C 103,235 14 G vs. T 0.175 (G) 0.083 (G) 0.83 (0.78-0.87) 0 (0-48) 5.41e-12
rs9275422 chr6:32670548 HLA-DQB1 [+34388bp] All: C 103,235 14 A vs. G 0.167 (A) 0.083 (A) 0.83 (0.78-0.87) 0 (0-49) 5.44e-12
rs7454108 chr6:32681483 HLA-DQA2 [-27636bp] All: C 99,286 13 C vs. T 0.175 (C) 0.083 (C) 0.82 (0.78-0.87) 1 (0-57) 5.64e-12
rs9275435 chr6:32671332 HLA-DQB1 [+35172bp] All: C 103,235 14 C vs. G 0.167 (C) 0.083 (C) 0.83 (0.78-0.87) 0 (0-50) 5.96e-12
rs9275434 chr6:32671247 HLA-DQB1 [+35087bp] All: C 103,235 14 T vs. C 0.167 (T) 0.067 (T) 0.83 (0.78-0.87) 0 (0-50) 6.00e-12
rs9275395 chr6:32669483 HLA-DQB1 [+33323bp] All: C 103,235 14 G vs. A 0.167 (G) 0.075 (G) 0.83 (0.78-0.87) 0 (0-50) 6.04e-12
rs9275394 chr6:32669454 HLA-DQB1 [+33294bp] All: C 103,235 14 C vs. A 0.167 (C) 0.083 (C) 0.83 (0.78-0.87) 0 (0-50) 6.07e-12
rs9275400 chr6:32669761 HLA-DQB1 [+33601bp] All: C 103,235 14 G vs. C 0.175 (G) 0.075 (G) 0.83 (0.78-0.87) 0 (0-51) 6.39e-12
rs9275373 chr6:32668411 HLA-DQB1 [+32251bp] All: C 103,235 14 A vs. G 0.175 (A) 0.092 (A) 0.82 (0.77-0.87) 0 (0-49) 6.49e-12
rs9275437 chr6:32671412 HLA-DQB1 [+35252bp] All: C 103,235 14 T vs. C 0.175 (T) 0.067 (T) 0.82 (0.78-0.87) 0 (0-51) 6.72e-12
rs9275430 chr6:32671086 HLA-DQB1 [+34926bp] All: C 103,235 14 T vs. C 0.158 (T) 0.083 (T) 0.83 (0.78-0.87) 0 (0-51) 7.09e-12
rs9275429 chr6:32671057 HLA-DQB1 [+34897bp] All: C 103,235 14 A vs. G 0.158 (A) 0.083 (A) 0.83 (0.78-0.87) 0 (0-51) 7.12e-12
rs9275546 chr6:32676445 HLA-DQA2 [-32674bp] All: C 99,286 13 G vs. T 0.308 (G) 0.242 (G) 0.82 (0.78-0.87) 2 (0-57) 7.81e-12
rs9275275 chr6:32662607 HLA-DQB1 [+26447bp] All: C 103,235 14 A vs. G 0.175 (A) 0.083 (A) 0.81 (0.77-0.86) 0 (0-52) 7.90e-12
rs9275383 chr6:32668846 HLA-DQB1 [+32686bp] All: C 103,235 14 T vs. G 0.175 (T) 0.117 (T) 0.82 (0.78-0.87) 0 (0-44) 9.29e-12
rs9275387 chr6:32669013 HLA-DQB1 [+32853bp] All: C 103,235 14 C vs. T 0.175 (C) 0.083 (C) 0.83 (0.79-0.88) 0 (0-48) 1.01e-11
rs3957148 chr6:32682137 HLA-DQA2 [-26982bp] All: C 99,286 13 G vs. A 0.175 (G) 0.092 (G) 0.83 (0.78-0.87) 4 (0-58) 1.37e-11
rs3998159 chr6:32682019 HLA-DQA2 [-27100bp] All: C 99,286 13 C vs. A 0.175 (C) 0.083 (C) 0.83 (0.78-0.87) 2 (0-58) 1.39e-11
rs9275442 chr6:32671755 HLA-DQB1 [+35595bp] All: C 99,286 13 A vs. G 0.175 (A) 0.083 (A) 0.82 (0.77-0.87) 0 (0-54) 1.55e-11
rs9275426 chr6:32670912 HLA-DQB1 [+34752bp] All: C 103,235 14 C vs. T 0.167 (C) 0.067 (C) 0.82 (0.78-0.87) 0 (0-52) 1.75e-11
rs9275362 chr6:32667957 HLA-DQB1 [+31797bp] All: C 99,286 13 T vs. C 0.15 (T) 0.2 (T) 0.74 (0.68-0.81) 0 (0-55) 1.89e-11
rs9275445 chr6:32671811 HLA-DQB1 [+35651bp] All: C 99,286 13 G vs. A - - 1.23 (1.16-1.31) 0 (0-54) 1.91e-11
rs9275599 chr6:32682429 HLA-DQA2 [-26690bp] All: C 99,286 13 T vs. C 0.15 (T) 0.042 (T) 0.82 (0.77-0.87) 5 (0-59) 3.15e-11
rs9275340 chr6:32667458 HLA-DQB1 [+31298bp] All: C 99,286 13 C vs. T - - 1.26 (1.18-1.35) 0 (0-54) 8.29e-11
rs9275477 chr6:32672641 HLA-DQA2 [-36478bp] All: C 99,286 13 C vs. A 0.175 (C) - 0.81 (0.77-0.87) 1 (0-57) 1.33e-10
rs9275476 chr6:32672624 HLA-DQB1 [+36464bp] All: C 99,286 13 C vs. T 0.175 (C) 0.075 (C) 0.81 (0.77-0.87) 1 (0-57) 1.34e-10
rs9275490 chr6:32673385 HLA-DQA2 [-35734bp] All: C 99,286 13 G vs. C 0.175 (G) 0.067 (G) 0.82 (0.77-0.87) 7 (0-60) 2.36e-10
rs9275347 chr6:32667623 HLA-DQB1 [+31463bp] All: C 99,286 13 G vs. A - - 1.24 (1.16-1.33) 0 (0-48) 1.65e-09
rs9275348 chr6:32667638 HLA-DQB1 [+31478bp] All: C 99,286 13 G vs. A - - 1.24 (1.16-1.33) 0 (0-48) 1.65e-09
rs9275493 chr6:32673475 HLA-DQA2 [-35644bp] All: C 99,286 13 C vs. T 0.2 (C) - 0.83 (0.78-0.89) 0 (0-41) 4.56e-09
rs3873448 chr6:32683055 HLA-DQA2 [-26064bp] All: C 103,235 14 T vs. C 0.133 (T) - 0.85 (0.81-0.90) 0 (0-53) 4.79e-09

Association studies for this region [+]