HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275360 chr6:32667937 HLA-DQB1 [+31777bp] All: C 103,235 14 T vs. A 0.192 (T) 0.15 (T) 0.85 (0.81-0.90) 0 (0-4) 6.41e-09
rs3873452 chr6:32683309 HLA-DQA2 [-25810bp] All: C 103,235 14 C vs. G 0.133 (C) 0.167 (C) 0.85 (0.81-0.90) 0 (0-54) 1.97e-08
rs3873453 chr6:32683382 HLA-DQA2 [-25737bp] All: C 103,235 14 C vs. T - - 1.16 (1.10-1.23) 0 (0-36) 2.13e-08
rs9275611 chr6:32683763 HLA-DQA2 [-25356bp] All: C 103,235 14 A vs. G 0.142 (A) 0.158 (A) 0.87 (0.82-0.91) 0 (0-43) 3.62e-08
rs9275365 chr6:32668125 HLA-DQB1 [+31965bp] All: C 103,235 14 A vs. G 0.192 (A) 0.25 (A) 0.86 (0.82-0.91) 0 (0-6) 4.13e-08
rs9275642 chr6:32684935 HLA-DQA2 [-24184bp] All: C 103,235 14 C vs. T - - 1.14 (1.09-1.19) 0 (0-46) 4.22e-08
rs9275358 chr6:32667895 HLA-DQB1 [+31735bp] All: C 103,235 14 G vs. C 0.158 (G) 0.225 (G) 0.85 (0.80-0.90) 0 (-) 6.65e-08
rs3873451 chr6:32683240 HLA-DQA2 [-25879bp] All: C 103,235 14 A vs. G - - 1.16 (1.10-1.22) 0 (0-50) 8.44e-08
rs9275319 chr6:32666295 HLA-DQB1 [+30135bp] All: C 103,235 14 G vs. A 0.192 (G) 0.217 (G) 0.88 (0.83-0.92) 0 (0-13) 9.40e-08
rs9275312 chr6:32665728 HLA-DQB1 [+29568bp] All: C 103,235 14 G vs. A 0.192 (G) 0.258 (G) 0.88 (0.84-0.92) 0 (0-12) 1.59e-07
rs9275328 chr6:32666822 HLA-DQB1 [+30662bp] All: C 100,402 13 T vs. C 0.183 (T) 0.258 (T) 0.87 (0.83-0.92) 0 (0-11) 1.65e-07
rs9275318 chr6:32666173 HLA-DQB1 [+30013bp] All: C 103,235 14 G vs. A 0.192 (G) 0.217 (G) 0.88 (0.84-0.92) 0 (0-11) 1.88e-07
rs9275330 chr6:32666875 HLA-DQB1 [+30715bp] All: C 103,235 14 G vs. A 0.183 (G) 0.258 (G) 0.88 (0.84-0.92) 0 (0-11) 1.97e-07
rs9275331 chr6:32666899 HLA-DQB1 [+30739bp] All: C 103,235 14 G vs. A 0.175 (G) 0.258 (G) 0.88 (0.84-0.92) 0 (0-11) 1.98e-07
rs9275333 chr6:32666968 HLA-DQB1 [+30808bp] All: C 103,235 14 C vs. T 0.183 (C) 0.25 (C) 0.88 (0.84-0.92) 0 (0-11) 2.16e-07
rs9275641 chr6:32684919 HLA-DQA2 [-24200bp] All: C 99,286 13 C vs. T - - 1.12 (1.07-1.18) 0 (0-48) 4.61e-07
rs7738118 chr6:32684957 HLA-DQA2 [-24162bp] All: C 99,286 13 A vs. G 0.208 (A) 0.217 (A) 0.89 (0.85-0.93) 0 (0-55) 5.24e-07
rs9275608 chr6:32683708 HLA-DQA2 [-25411bp] All: C 103,235 14 G vs. A 0.142 (G) 0.225 (G) 0.88 (0.84-0.92) 0 (0-42) 5.26e-07
rs7738119 chr6:32684959 HLA-DQA2 [-24160bp] All: C 99,286 13 A vs. G 0.217 (A) 0.217 (A) 0.89 (0.85-0.93) 0 (0-55) 5.42e-07
rs9275610 chr6:32683750 HLA-DQA2 [-25369bp] All: C 103,235 14 C vs. T 0.142 (C) 0.242 (C) 0.88 (0.84-0.93) 0 (0-42) 6.77e-07
rs9275638 chr6:32684760 HLA-DQA2 [-24359bp] All: C 103,235 14 C vs. T - - 1.13 (1.08-1.19) 0 (0-40) 7.45e-07
rs6916779 chr6:32684317 HLA-DQA2 [-24802bp] All: C 103,235 14 C vs. T 0.142 (C) 0.233 (C) 0.88 (0.84-0.93) 0 (0-40) 9.53e-07
rs6457636 chr6:32684513 HLA-DQA2 [-24606bp] All: C 103,235 14 A vs. G 0.2 (A) 0.3 (A) 0.88 (0.84-0.93) 0 (0-40) 9.61e-07
rs5024431 chr6:32684344 HLA-DQA2 [-24775bp] All: C 103,235 14 A vs. G 0.217 (A) 0.3 (A) 0.91 (0.87-0.94) 0 (0-43) 1.09e-06
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
rs9275509 chr6:32674251 HLA-DQA2 [-34868bp] All: C 103,235 14 G vs. T - - 1.11 (1.06-1.16) 62 (32-79) 1.28e-05
rs2647045 chr6:32668100 HLA-DQB1 [+31940bp] All: C 103,235 14 A vs. G 0.283 (A) 0.425 (A) 0.92 (0.88-0.95) 0 (0-7) 1.47e-05
rs116309362 chr6:32754876 HLA-DQB2 [+23565bp] All: C 103,235 14 C vs. T 0.042 (C) - 0.78 (0.70-0.88) 0 (0-54) 2.41e-05
rs9275486 chr6:32673099 HLA-DQA2 [-36020bp] C - 11 A vs. T - - <1 (-) 10 (-) <1.00e-04
rs9275495 chr6:32673574 HLA-DQA2 [-35545bp] C - 10 A vs. T 0.167 (T) 0.067 (T) >1 (-) 22 (-) <1.00e-04
rs9275563 chr6:32677912 HLA-DQA2 [-31207bp] All: C 103,235 14 T vs. C 0.45 (T) 0.442 (T) 0.94 (0.91-0.97) 0 (0-46) 1.23e-04
rs9275639 chr6:32684831 HLA-DQA2 [-24288bp] C - 12 A vs. T - - >1 (-) 0 (-) <0.05
rs28724890 chr6:32741844 HLA-DQB2 [+10533bp] All: C 55,164 7 A vs. G 0.025 (A) - 1.32 (1.14-1.53) 67 (26-85) 2.27e-04
rs9275338 chr6:32667343 HLA-DQB1 [+31183bp] C - 12 A vs. T 0.175 (T) 0.258 (T) >1 (-) 0 (-) <0.05
rs9275339 chr6:32667406 HLA-DQB1 [+31246bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 63 (35-79) 2.55e-04
rs9275640 chr6:32684890 HLA-DQA2 [-24229bp] C - 11 T vs. C - - >1 (-) 0 (-) <0.05
rs9275223 chr6:32659839 HLA-DQB1 [+23679bp] C - 8 A vs. G 0.175 (A) 0.075 (A) <1 (-) 25 (-) <0.05
rs3998158 chr6:32681992 HLA-DQA2 [-27127bp] All: C 99,286 13 C vs. T 0.317 (C) 0.183 (C) 0.93 (0.89-0.97) 64 (36-80) 2.99e-04
rs3997854 chr6:32682915 HLA-DQA2 [-26204bp] C - 12 T vs. G 0.142 (G) 0.117 (G) >1 (-) 0 (-) <0.05
rs9275614 chr6:32684257 HLA-DQA2 [-24862bp] C - 12 A vs. G 0.142 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs9275609 chr6:32683713 HLA-DQA2 [-25406bp] C - 12 C vs. G 0.142 (G) 0.225 (G) >1 (-) 0 (-) <0.05
rs9275618 chr6:32684387 HLA-DQA2 [-24732bp] C - 12 A vs. G 0.142 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs1794275 chr6:32671248 HLA-DQB1 [+35088bp] All: C 99,286 13 A vs. G 0.175 (A) 0.208 (A) 1.08 (1.04-1.13) 45 (0-71) 3.53e-04
rs6936863 chr6:32684029 HLA-DQA2 [-25090bp] C - 12 C vs. G 0.217 (G) 0.3 (G) >1 (-) 0 (-) <0.05
rs3916765 chr6:32685550 HLA-DQA2 [-23569bp] C - 12 A vs. G 0.142 (A) 0.125 (A) <1 (-) 0 (-) <0.05
rs9275615 chr6:32684272 HLA-DQA2 [-24847bp] C - 11 A vs. T 0.142 (A) 0.175 (A) <1 (-) 0 (-) <0.05
rs9276434 chr6:32712666 HLA-DQA2 C - 3 T vs. C 0.15 (C) 0.0 (C) <1 (-) 51 (-) <0.05
rs9275531 chr6:32675592 HLA-DQA2 [-33527bp] All: C 103,235 14 G vs. A 0.308 (G) 0.2 (G) 0.93 (0.89-0.97) 64 (35-80) 5.22e-04
rs9275585 chr6:32680350 HLA-DQA2 [-28769bp] All: C 99,286 13 C vs. T 0.308 (C) 0.2 (C) 0.93 (0.90-0.97) 67 (41-82) 5.68e-04
rs9275586 chr6:32680376 HLA-DQA2 [-28743bp] All: C 99,286 13 T vs. G 0.3 (T) 0.2 (T) 0.93 (0.90-0.97) 67 (41-82) 5.71e-04

Association studies for this region [+]