HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276112 chr6:32697181 HLA-DQA2 [-11938bp] C - 10 A vs. G - - <1 (-) 20 (-) >0.05
rs13203429 chr6:32744852 HLA-DQB2 [+13541bp] C - 12 C vs. G 0.392 (C) 0.492 (G) >1 (-) 0 (-) >0.05
rs13203438 chr6:32744869 HLA-DQB2 [+13558bp] C - 12 C vs. G 0.392 (C) 0.492 (G) >1 (-) 0 (-) >0.05
rs28893525 chr6:32747262 HLA-DQB2 [+15951bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs875963 chr6:32691902 HLA-DQA2 [-17217bp] C - 10 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9275782 chr6:32689809 HLA-DQA2 [-19310bp] C - 11 A vs. G 0.333 (G) 0.158 (G) >1 (-) 14 (-) >0.05
rs9275783 chr6:32689812 HLA-DQA2 [-19307bp] C - 11 T vs. C 0.35 (C) 0.158 (C) >1 (-) 14 (-) >0.05
rs2859105 chr6:32698730 HLA-DQA2 [-10389bp] C - 8 A vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs875962 chr6:32691917 HLA-DQA2 [-17202bp] C - 10 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs9275804 chr6:32690266 HLA-DQA2 [-18853bp] C - 11 A vs. G 0.308 (G) 0.192 (G) >1 (-) 6 (-) >0.05
rs2859103 chr6:32699007 HLA-DQA2 [-10112bp] C - 8 A vs. G - 0.058 (A) >1 (-) 0 (-) >0.05
rs28986418 chr6:32755536 HLA-DQB2 [+24225bp] C - 12 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs3104398 chr6:32685685 HLA-DQA2 [-23434bp] C - 10 A vs. G 0.117 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28986417 chr6:32755535 HLA-DQB2 [+24224bp] C - 12 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs9276220 chr6:32700372 HLA-DQA2 [-8747bp] C - 11 T vs. G - - >1 (-) 8 (-) >0.05
rs7755580 chr6:32706441 HLA-DQA2 [-2678bp] C - 11 A vs. T 0.292 (A) 0.125 (A) <1 (-) 21 (-) >0.05
rs28772317 chr6:32686846 HLA-DQA2 [-22273bp] C - 12 T vs. C 0.35 (C) 0.342 (T) <1 (-) 16 (-) >0.05
rs34043227 chr6:32748590 HLA-DQB2 [+17279bp] C - 12 T vs. C 0.05 (T) - <1 (-) 19 (-) >0.05
rs28893527 chr6:32747592 HLA-DQB2 [+16281bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28772318 chr6:32686847 HLA-DQA2 [-22272bp] C - 12 A vs. G 0.342 (A) 0.333 (G) >1 (-) 16 (-) >0.05
rs2621410 chr6:32746170 HLA-DQB2 [+14859bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28986399 chr6:32754593 HLA-DQB2 [+23282bp] C - 12 T vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28893536 chr6:32749659 HLA-DQB2 [+18348bp] C - 12 T vs. C 0.083 (T) 0.008 (T) >1 (-) 0 (-) >0.05
rs28893537 chr6:32749666 HLA-DQB2 [+18355bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986354 chr6:32750983 HLA-DQB2 [+19672bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs28986337 chr6:32748398 HLA-DQB2 [+17087bp] C - 12 T vs. C 0.067 (T) - >1 (-) 0 (-) >0.05
rs9275785 chr6:32689865 HLA-DQA2 [-19254bp] C - 11 C vs. G 0.325 (G) 0.158 (G) >1 (-) 13 (-) >0.05
rs2859078 chr6:32702449 HLA-DQA2 [-6670bp] C - 10 A vs. G 0.192 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs7773694 chr6:32706334 HLA-DQA2 [-2785bp] C - 11 A vs. G 0.292 (A) 0.125 (A) <1 (-) 21 (-) >0.05
rs9275735 chr6:32688787 HLA-DQA2 [-20332bp] C - 11 A vs. C 0.2 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs28371286 chr6:32675994 HLA-DQA2 [-33125bp] C - 12 T vs. C 0.258 (T) - <1 (-) 34 (-) >0.05
rs9275775 chr6:32689687 HLA-DQA2 [-19432bp] C - 11 T vs. C 0.3 (T) 0.158 (T) <1 (-) 11 (-) >0.05
rs2006165 chr6:32728787 HLA-DQB2 C - 12 A vs. G 0.483 (G) 0.2 (G) <1 (-) 29 (-) >0.05
rs28986347 chr6:32749109 HLA-DQB2 [+17798bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs9275787 chr6:32689903 HLA-DQA2 [-19216bp] C - 11 A vs. T 0.333 (T) 0.158 (T) >1 (-) 14 (-) >0.05
rs9276138 chr6:32697893 HLA-DQA2 [-11226bp] C - 11 T vs. G 0.208 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs9276250 chr6:32701433 HLA-DQA2 [-7686bp] C - 11 C vs. G - - <1 (-) 7 (-) >0.05
rs9276095 chr6:32696816 HLA-DQA2 [-12303bp] C - 10 A vs. G - - >1 (-) 19 (-) >0.05
rs9276093 chr6:32696770 HLA-DQA2 [-12349bp] C - 10 A vs. G 0.333 (G) 0.167 (G) >1 (-) 19 (-) >0.05
rs28986332 chr6:32747678 HLA-DQB2 [+16367bp] C - 12 C vs. G 0.092 (C) 0.008 (C) >1 (-) 0 (-) >0.05
rs28893547 chr6:32750216 HLA-DQB2 [+18905bp] C - 12 T vs. C 0.092 (A) - >1 (-) 20 (-) >0.05
rs9275784 chr6:32689834 HLA-DQA2 [-19285bp] C - 11 C vs. G 0.325 (C) 0.158 (C) <1 (-) 13 (-) >0.05
rs12661352 chr6:32745527 HLA-DQB2 [+14216bp] C - 12 T vs. G 0.092 (T) - >1 (-) 0 (-) >0.05
rs9275798 chr6:32690153 HLA-DQA2 [-18966bp] C - 11 A vs. G 0.3 (G) 0.15 (G) >1 (-) 10 (-) >0.05
rs9276219 chr6:32700358 HLA-DQA2 [-8761bp] C - 11 A vs. G - - <1 (-) 8 (-) >0.05
rs34153000 chr6:32747016 HLA-DQB2 [+15705bp] C - 12 A vs. C 0.05 (A) - <1 (-) 19 (-) >0.05
rs9276123 chr6:32697426 HLA-DQA2 [-11693bp] C - 10 A vs. G 0.308 (G) - >1 (-) 17 (-) >0.05
rs9276124 chr6:32697444 HLA-DQA2 [-11675bp] C - 10 T vs. C 0.3 (T) 0.2 (T) <1 (-) 17 (-) >0.05
rs28986338 chr6:32748810 HLA-DQB2 [+17499bp] C - 12 T vs. C 0.083 (T) - >1 (-) 0 (-) >0.05
rs17212748 chr6:32675266 HLA-DQA2 [-33853bp] C - 12 T vs. C 0.258 (T) 0.383 (T) <1 (-) 36 (-) >0.05

Association studies for this region [+]