HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17212643 chr6:32674865 HLA-DQA2 [-34254bp] C - 12 A vs. T 0.183 (T) 0.283 (T) <1 (-) 8 (-) >0.05
rs117807149 chr6:32732156 HLA-DQB2 [+845bp] C - 11 A vs. T - 0.05 (A) >1 (-) 0 (-) >0.05
rs9276413 chr6:32710556 HLA-DQA2 C - 11 T vs. C 0.483 (T) 0.175 (C) >1 (-) 23 (-) >0.05
rs9348891 chr6:32664971 HLA-DQB1 [+28811bp] C - 12 A vs. G 0.183 (G) 0.3 (G) >1 (-) 4 (-) >0.05
rs7748018 chr6:32717333 MIR3135B [-356bp] C - 11 T vs. C 0.5 (T) 0.233 (C) <1 (-) 30 (-) >0.05
rs2621407 chr6:32747569 HLA-DQB2 [+16258bp] C - 12 T vs. C 0.433 (C) 0.25 (C) >1 (-) 15 (-) >0.05
rs2857192 chr6:32747550 HLA-DQB2 [+16239bp] C - 12 A vs. T 0.433 (T) 0.25 (T) >1 (-) 15 (-) >0.05
rs2857183 chr6:32750982 HLA-DQB2 [+19671bp] C - 12 A vs. G 0.342 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs58538826 chr6:32704815 HLA-DQA2 [-4304bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs6918587 chr6:32722611 HLA-DQB2 [-1264bp] C - 12 A vs. G 0.492 (A) 0.242 (A) >1 (-) 27 (-) >0.05
rs6918592 chr6:32722614 HLA-DQB2 [-1261bp] C - 12 A vs. G 0.492 (G) 0.242 (A) >1 (-) 27 (-) >0.05
rs9276425 chr6:32711050 HLA-DQA2 C - 8 T vs. C 0.192 (T) - <1 (-) 0 (-) >0.05
rs9276653 chr6:32746414 HLA-DQB2 [+15103bp] C - 12 A vs. G - - <1 (-) 12 (-) >0.05
rs1794283 chr6:32666358 HLA-DQB1 [+30198bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs6934347 chr6:32673223 HLA-DQA2 [-35896bp] C - 12 C vs. G - - >1 (-) 5 (-) >0.05
rs117996505 chr6:32737594 HLA-DQB2 [+6283bp] C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs28892573 chr6:32750915 HLA-DQB2 [+19604bp] C - 12 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs9276466 chr6:32716452 MIR3135B [-1237bp] C - 11 T vs. G 0.492 (T) 0.233 (T) >1 (-) 30 (-) >0.05
rs2621408 chr6:32747542 HLA-DQB2 [+16231bp] C - 12 C vs. G 0.408 (C) 0.25 (C) <1 (-) 18 (-) >0.05
rs6457657 chr6:32737104 HLA-DQB2 [+5793bp] C - 12 A vs. T 0.35 (A) 0.242 (T) >1 (-) 23 (-) >0.05
rs2858883 chr6:32700761 HLA-DQA2 [-8358bp] C - 11 T vs. C 0.342 (C) 0.108 (C) >1 (-) 0 (-) >0.05
rs9276441 chr6:32714894 HLA-DQA2 C - 11 C vs. G 0.492 (G) 0.233 (G) <1 (-) 30 (-) >0.05
rs28573770 chr6:32679275 HLA-DQA2 [-29844bp] C - 6 A vs. T - - <1 (-) 14 (-) >0.05
rs2857193 chr6:32747528 HLA-DQB2 [+16217bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 9 (-) >0.05
rs2227136 chr6:32716810 MIR3135B [-879bp] C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs2227135 chr6:32716813 MIR3135B [-876bp] C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs2621405 chr6:32748039 HLA-DQB2 [+16728bp] C - 12 T vs. C 0.417 (C) 0.242 (C) <1 (-) 8 (-) >0.05
rs9276490 chr6:32718681 MIR3135B [+925bp] C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 29 (-) >0.05
rs9276417 chr6:32710712 HLA-DQA2 C - 8 C vs. G - - >1 (-) 0 (-) >0.05
rs1825003 chr6:32736254 HLA-DQB2 [+4943bp] C - 12 A vs. G 0.35 (G) 0.242 (A) <1 (-) 22 (-) >0.05
rs9276580 chr6:32727209 HLA-DQB2 C - 10 T vs. G - - >1 (-) 15 (-) >0.05
rs9276514 chr6:32720151 MIR3135B [+2395bp] C - 12 T vs. C 0.5 (C) 0.233 (T) <1 (-) 28 (-) >0.05
rs62396667 chr6:32741158 HLA-DQB2 [+9847bp] C - 12 A vs. G 0.008 (G) - <1 (-) 0 (-) >0.05
rs2621421 chr6:32740671 HLA-DQB2 [+9360bp] C - 12 C vs. G 0.417 (G) 0.275 (G) <1 (-) 24 (-) >0.05
rs9275869 chr6:32691540 HLA-DQA2 [-17579bp] C - 10 A vs. G 0.317 (A) 0.25 (G) >1 (-) 18 (-) >0.05
rs1794528 chr6:32672439 HLA-DQB1 [+36279bp] C - 8 T vs. C 0.1 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs9461808 chr6:32723665 HLA-DQB2 [-210bp] C - 4 T vs. C 0.075 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9276447 chr6:32715569 HLA-DQA2 [+577bp] C - 11 T vs. G 0.492 (G) 0.233 (G) <1 (-) 31 (-) >0.05
rs6934185 chr6:32673233 HLA-DQA2 [-35886bp] C - 12 A vs. G - - >1 (-) 5 (-) >0.05
rs9276585 chr6:32731313 HLA-DQB2 [+2bp] C - 12 A vs. T 0.2 (A) - <1 (-) 0 (-) >0.05
rs28891492 chr6:32662451 HLA-DQB1 [+26291bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs1794530 chr6:32671800 HLA-DQB1 [+35640bp] C - 8 T vs. G - - <1 (-) 0 (-) >0.05
rs9276481 chr6:32717918 MIR3135B [+162bp] C - 11 A vs. T 0.492 (T) 0.233 (T) <1 (-) 30 (-) >0.05
rs6907114 chr6:32673361 HLA-DQA2 [-35758bp] C - 12 A vs. G 0.183 (A) 0.275 (A) <1 (-) 5 (-) >0.05
rs9275683 chr6:32687329 HLA-DQA2 [-21790bp] C - 12 A vs. G 0.5 (A) 0.25 (G) <1 (-) 7 (-) >0.05
rs6457661 chr6:32737494 HLA-DQB2 [+6183bp] C - 12 T vs. C 0.35 (T) 0.242 (C) <1 (-) 23 (-) >0.05
rs60189437 chr6:32718267 MIR3135B [+511bp] C - 3 A vs. C - - <1 (-) 0 (-) >0.05
rs9275950 chr6:32693129 HLA-DQA2 [-15990bp] C - 10 T vs. C 0.5 (C) 0.258 (C) >1 (-) 18 (-) >0.05
rs6457656 chr6:32736978 HLA-DQB2 [+5667bp] C - 12 T vs. C 0.35 (C) 0.242 (T) >1 (-) 21 (-) >0.05
rs9461807 chr6:32723506 HLA-DQB2 [-369bp] C - 4 A vs. G 0.075 (G) 0.042 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]