HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275508 chr6:32674159 HLA-DQA2 [-34960bp] C - 12 C vs. G - - >1 (-) 64 (-) >0.05
rs4713588 chr6:32659502 HLA-DQB1 [+23342bp] C - 8 A vs. C - - >1 (-) 0 (-) >0.05
rs9275504 chr6:32673986 HLA-DQA2 [-35133bp] C - 11 T vs. C 0.317 (T) 0.183 (T) <1 (-) 67 (-) >0.05
rs9275249 chr6:32661137 HLA-DQB1 [+24977bp] C - 10 A vs. C 0.3 (C) - >1 (-) 72 (-) >0.05
rs9275234 chr6:32660586 HLA-DQB1 [+24426bp] C - 11 T vs. C - - <1 (-) 15 (-) >0.05
rs116731949 chr6:32742762 HLA-DQB2 [+11451bp] C - 7 T vs. C - - <1 (-) 0 (-) >0.05
rs9275222 chr6:32659516 HLA-DQB1 [+23356bp] C - 11 A vs. T - - >1 (-) 29 (-) >0.05
rs113773636 chr6:32673719 HLA-DQA2 [-35400bp] C - 6 C vs. G - 0.133 (G) >1 (-) 22 (-) >0.05
rs35120848 chr6:32670495 HLA-DQB1 [+34335bp] C - 11 T vs. C 0.15 (T) 0.167 (T) >1 (-) 55 (-) >0.05
rs10947332 chr6:32677440 HLA-DQA2 [-31679bp] C - 11 A vs. G 0.133 (A) 0.1 (A) >1 (-) 72 (-) >0.05
rs200419915 chr6:32662222 HLA-DQB1 [+26062bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs34709043 chr6:32676486 HLA-DQA2 [-32633bp] C - 11 A vs. C 0.133 (C) 0.108 (C) <1 (-) 71 (-) >0.05
rs9275247 chr6:32661015 HLA-DQB1 [+24855bp] C - 12 T vs. C 0.458 (C) 0.483 (T) >1 (-) 20 (-) >0.05
rs9275246 chr6:32661003 HLA-DQB1 [+24843bp] C - 12 A vs. C 0.467 (A) 0.425 (C) <1 (-) 20 (-) >0.05
rs9275417 chr6:32670214 HLA-DQB1 [+34054bp] C - 12 A vs. C 0.325 (C) 0.292 (C) >1 (-) 61 (-) >0.05
rs9275500 chr6:32673788 HLA-DQA2 [-35331bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9275499 chr6:32673778 HLA-DQA2 [-35341bp] C - 11 T vs. G - - >1 (-) 71 (-) >0.05
rs9275369 chr6:32668255 HLA-DQB1 [+32095bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs9275370 chr6:32668258 HLA-DQB1 [+32098bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs9275520 chr6:32674839 HLA-DQA2 [-34280bp] C - 11 C vs. G - - <1 (-) 70 (-) >0.05
rs34388057 chr6:32675951 HLA-DQA2 [-33168bp] C - 11 A vs. T 0.133 (T) 0.1 (T) <1 (-) 71 (-) >0.05
rs9275243 chr6:32660784 HLA-DQB1 [+24624bp] C - 12 C vs. G 0.458 (G) 0.467 (C) >1 (-) 21 (-) >0.05
rs34751870 chr6:32673332 HLA-DQA2 [-35787bp] C - 11 T vs. C 0.133 (T) 0.025 (T) >1 (-) 69 (-) >0.05
rs9275254 chr6:32661209 HLA-DQB1 [+25049bp] C - 12 T vs. G 0.433 (G) 0.433 (T) >1 (-) 21 (-) >0.05
rs9275255 chr6:32661246 HLA-DQB1 [+25086bp] C - 12 A vs. T 0.483 (A) 0.417 (T) <1 (-) 21 (-) >0.05
rs9275253 chr6:32661204 HLA-DQB1 [+25044bp] C - 12 T vs. C 0.45 (T) 0.45 (C) <1 (-) 21 (-) >0.05
rs9275496 chr6:32673714 HLA-DQA2 [-35405bp] C - 12 T vs. C 0.325 (C) 0.225 (C) >1 (-) 63 (-) >0.05
rs9275399 chr6:32669712 HLA-DQB1 [+33552bp] C - 12 A vs. G 0.333 (G) 0.25 (G) >1 (-) 62 (-) >0.05
rs12525220 chr6:32675470 HLA-DQA2 [-33649bp] C - 11 A vs. G 0.017 (A) 0.133 (A) >1 (-) 0 (-) >0.05
rs2647052 chr6:32672032 HLA-DQB1 [+35872bp] C - 12 A vs. G - 0.25 (A) >1 (-) 20 (-) >0.05
rs9275244 chr6:32660881 HLA-DQB1 [+24721bp] C - 12 T vs. G 0.483 (T) 0.417 (G) <1 (-) 20 (-) >0.05
rs9275236 chr6:32660601 HLA-DQB1 [+24441bp] C - 11 A vs. G 0.467 (G) 0.467 (A) >1 (-) 17 (-) >0.05
rs2086399 chr6:32750370 HLA-DQB2 [+19059bp] C - 12 A vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs28699566 chr6:32686296 HLA-DQA2 [-22823bp] C - 6 A vs. T 0.008 (T) 0.025 (T) >1 (-) 9 (-) >0.05
rs9275238 chr6:32660689 HLA-DQB1 [+24529bp] C - 12 A vs. G - 0.467 (A) >1 (-) 19 (-) >0.05
rs12527228 chr6:32679992 HLA-DQA2 [-29127bp] C - 10 T vs. C 0.017 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs9275432 chr6:32671185 HLA-DQB1 [+35025bp] C - 12 T vs. G 0.308 (T) 0.292 (T) <1 (-) 61 (-) >0.05
rs9275433 chr6:32671206 HLA-DQB1 [+35046bp] C - 12 C vs. G 0.308 (C) 0.283 (C) <1 (-) 61 (-) >0.05
rs28394125 chr6:32686457 HLA-DQA2 [-22662bp] C - 6 A vs. C 0.008 (A) - <1 (-) 10 (-) >0.05
rs149005483 chr6:32674166 HLA-DQA2 [-34953bp] C - 10 A vs. T - - <1 (-) 0 (-) >0.05
rs9275392 chr6:32669425 HLA-DQB1 [+33265bp] C - 12 A vs. T 0.325 (T) 0.292 (T) >1 (-) 62 (-) >0.05
rs9275393 chr6:32669439 HLA-DQB1 [+33279bp] C - 12 A vs. G 0.325 (A) 0.292 (A) <1 (-) 62 (-) >0.05
rs112466823 chr6:32660104 HLA-DQB1 [+23944bp] C - 8 T vs. C 0.017 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs112032264 chr6:32660115 HLA-DQB1 [+23955bp] C - 8 C vs. G 0.017 (C) 0.133 (C) >1 (-) 0 (-) >0.05
rs9275390 chr6:32669156 HLA-DQB1 [+32996bp] C - 12 T vs. C 0.325 (C) 0.283 (C) >1 (-) 61 (-) >0.05
rs9275391 chr6:32669169 HLA-DQB1 [+33009bp] C - 12 T vs. C 0.325 (T) 0.283 (T) <1 (-) 61 (-) >0.05
rs116171556 chr6:32720024 MIR3135B [+2268bp] C - 7 A vs. T - - >1 (-) 10 (-) >0.05
rs9275418 chr6:32670244 HLA-DQB1 [+34084bp] C - 12 A vs. G 0.325 (G) 0.292 (G) >1 (-) 62 (-) >0.05
rs9275596 chr6:32681631 HLA-DQA2 [-27488bp] C - 12 T vs. C 0.367 (C) 0.167 (C) <1 (-) 28 (-) >0.05
rs1612904 chr6:32669018 HLA-DQB1 [+32858bp] C - 12 A vs. C 0.375 (C) 0.158 (C) <1 (-) 30 (-) >0.05

Association studies for this region [+]