HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28371319 chr6:32678795 HLA-DQA2 [-30324bp] C - 12 A vs. T 0.258 (A) 0.383 (A) <1 (-) 40 (-) >0.05
rs9272186 chr6:32601635 HLA-DQA1 C - 3 T vs. C 0.333 (T) 0.433 (T) >1 (-) 36 (-) >0.05
rs28371324 chr6:32679068 HLA-DQA2 [-30051bp] C - 12 T vs. C 0.258 (C) 0.367 (C) >1 (-) 34 (-) >0.05
rs2647084 chr6:32679779 HLA-DQA2 [-29340bp] C - 12 A vs. T 0.258 (T) 0.367 (T) >1 (-) 34 (-) >0.05
rs116630455 chr6:32601946 HLA-DQA1 C - 4 T vs. C 0.158 (C) 0.2 (C) >1 (-) 72 (-) >0.05
rs28755385 chr6:32676425 HLA-DQA2 [-32694bp] C - 12 T vs. C 0.275 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs28383272 chr6:32586207 HLA-DQA1 [-9749bp] C - 3 A vs. T 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383273 chr6:32586221 HLA-DQA1 [-9735bp] C - 3 T vs. C 0.125 (T) - >1 (-) 0 (-) >0.05
rs28755386 chr6:32676484 HLA-DQA2 [-32635bp] C - 12 A vs. C 0.275 (A) 0.383 (A) <1 (-) 37 (-) >0.05
rs9275601 chr6:32682664 HLA-DQA2 [-26455bp] C - 8 T vs. C 0.383 (T) 0.408 (T) <1 (-) 0 (-) >0.05
rs28383274 chr6:32586246 HLA-DQA1 [-9710bp] C - 3 A vs. G 0.125 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs28755387 chr6:32676488 HLA-DQA2 [-32631bp] C - 12 A vs. C 0.267 (C) 0.383 (C) >1 (-) 37 (-) >0.05
rs3957217 chr6:32678509 HLA-DQA2 [-30610bp] C - 12 A vs. G 0.258 (G) 0.4 (G) >1 (-) 34 (-) >0.05
rs17205802 chr6:32651072 HLA-DQB1 [+14912bp] C - 6 T vs. G 0.142 (G) 0.233 (G) <1 (-) 44 (-) >0.05
rs12183091 chr6:32685999 HLA-DQA2 [-23120bp] C - 12 A vs. T 0.35 (T) 0.325 (A) <1 (-) 16 (-) >0.05
rs28371295 chr6:32677129 HLA-DQA2 [-31990bp] C - 12 A vs. T 0.267 (T) 0.392 (T) >1 (-) 34 (-) >0.05
rs117921525 chr6:32672734 HLA-DQA2 [-36385bp] C - 5 A vs. C - 0.108 (A) >1 (-) 0 (-) >0.05
rs28371294 chr6:32677124 HLA-DQA2 [-31995bp] C - 12 A vs. T 0.267 (A) 0.383 (A) <1 (-) 34 (-) >0.05
rs17205872 chr6:32651558 HLA-DQB1 [+15398bp] C - 7 A vs. G 0.158 (A) 0.325 (A) >1 (-) 40 (-) >0.05
rs4538748 chr6:32657505 HLA-DQB1 [+21345bp] C - 10 T vs. C 0.267 (C) 0.367 (T) <1 (-) 58 (-) >0.05
rs28371290 chr6:32676125 HLA-DQA2 [-32994bp] C - 12 T vs. C 0.242 (T) 0.25 (T) <1 (-) 36 (-) >0.05
rs28371312 chr6:32678306 HLA-DQA2 [-30813bp] C - 12 T vs. C 0.267 (T) 0.367 (T) <1 (-) 31 (-) >0.05
rs28371322 chr6:32679047 HLA-DQA2 [-30072bp] C - 12 A vs. G 0.25 (A) 0.383 (A) <1 (-) 34 (-) >0.05
rs28371313 chr6:32678309 HLA-DQA2 [-30810bp] C - 12 T vs. C 0.258 (T) 0.383 (T) <1 (-) 31 (-) >0.05
rs9405119 chr6:32657681 HLA-DQB1 [+21521bp] C - 9 A vs. G 0.183 (G) 0.342 (G) <1 (-) 18 (-) >0.05
rs6936707 chr6:32684069 HLA-DQA2 [-25050bp] C - 6 T vs. C - 0.058 (T) >1 (-) 0 (-) >0.05
rs116189954 chr6:32685332 HLA-DQA2 [-23787bp] C - 9 T vs. C - - <1 (-) 9 (-) >0.05
rs6915986 chr6:32683898 HLA-DQA2 [-25221bp] C - 6 T vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs28371289 chr6:32676075 HLA-DQA2 [-33044bp] C - 12 A vs. G 0.258 (G) 0.358 (G) >1 (-) 35 (-) >0.05
rs28383263 chr6:32585843 HLA-DQA1 [-10113bp] C - 4 T vs. C 0.133 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9271379 chr6:32587333 HLA-DQA1 [-8623bp] C - 4 T vs. C - 0.233 (T) <1 (-) 0 (-) >0.05
rs607998 chr6:32587038 HLA-DQA1 [-8918bp] C - 4 A vs. G 0.117 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs17212286 chr6:32651819 HLA-DQB1 [+15659bp] C - 6 A vs. G 0.158 (A) 0.325 (A) >1 (-) 47 (-) >0.05
rs17205949 chr6:32651816 HLA-DQB1 [+15656bp] C - 6 A vs. C 0.142 (A) 0.325 (A) >1 (-) 47 (-) >0.05
rs9378274 chr6:32656983 HLA-DQB1 [+20823bp] C - 9 A vs. T 0.15 (A) 0.233 (A) >1 (-) 18 (-) >0.05
rs9391891 chr6:32656975 HLA-DQB1 [+20815bp] C - 9 A vs. C 0.125 (A) 0.217 (A) >1 (-) 18 (-) >0.05
rs28772272 chr6:32656980 HLA-DQB1 [+20820bp] C - 9 T vs. C 0.142 (T) 0.242 (T) >1 (-) 18 (-) >0.05
rs17205942 chr6:32651798 HLA-DQB1 [+15638bp] C - 6 T vs. C 0.2 (T) 0.308 (T) >1 (-) 46 (-) >0.05
rs9405042 chr6:32657020 HLA-DQB1 [+20860bp] C - 9 C vs. G 0.175 (G) 0.325 (G) <1 (-) 19 (-) >0.05
rs9272185 chr6:32601620 HLA-DQA1 C - 3 A vs. G 0.333 (A) 0.45 (A) >1 (-) 38 (-) >0.05
rs28371310 chr6:32678246 HLA-DQA2 [-30873bp] C - 12 T vs. C 0.275 (C) 0.367 (C) >1 (-) 34 (-) >0.05
rs9272254 chr6:32603098 HLA-DQA1 C - 3 T vs. C 0.408 (T) 0.433 (T) <1 (-) 55 (-) >0.05
rs28383265 chr6:32585924 HLA-DQA1 [-10032bp] C - 3 T vs. C 0.125 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs9272183 chr6:32601604 HLA-DQA1 C - 3 T vs. C 0.342 (T) 0.442 (T) >1 (-) 37 (-) >0.05
rs9272172 chr6:32601260 HLA-DQA1 C - 3 C vs. G 0.258 (C) 0.208 (C) >1 (-) 27 (-) >0.05
rs28371309 chr6:32678234 HLA-DQA2 [-30885bp] C - 12 A vs. G 0.275 (A) 0.367 (A) <1 (-) 34 (-) >0.05
rs28383271 chr6:32586134 HLA-DQA1 [-9822bp] C - 4 T vs. C 0.125 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs17205851 chr6:32651265 HLA-DQB1 [+15105bp] C - 7 T vs. C 0.183 (C) 0.342 (C) <1 (-) 39 (-) >0.05
rs17205844 chr6:32651254 HLA-DQB1 [+15094bp] C - 7 C vs. G 0.183 (G) 0.342 (G) <1 (-) 40 (-) >0.05
rs28747064 chr6:32656770 HLA-DQB1 [+20610bp] C - 9 A vs. G - - <1 (-) 17 (-) >0.05

Association studies for this region [+]