LAMP3, chr3:182840001-182881627 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11711441 chr3:182821275 MCCC1 All: C 108,990 15 A vs. G 0.2 (A) 0.25 (A) 0.83 (0.79-0.87) 0 (0-53) 2.54e-14
Meta_image?name=rs11711441

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs484095 chr3:182869376 LAMP3 C - 13 T vs. C - - >1 (-) 37 (-) >0.05
rs149355692 chr3:182864272 LAMP3 C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs2653845 chr3:182905326 MCF2L2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs535298 chr3:182907993 MCF2L2 C - 13 T vs. C 0.083 (T) 0.058 (T) <1 (-) 0 (-) >0.05
rs536213 chr3:182908087 MCF2L2 C - 13 A vs. G 0.1 (A) 0.058 (A) <1 (-) 0 (-) >0.05
rs624269 chr3:182873863 LAMP3 C - 13 A vs. T 0.3 (T) 0.35 (T) >1 (-) 27 (-) >0.05
rs955861 chr3:182860626 LAMP3 C - 13 A vs. T 0.175 (A) 0.292 (A) >1 (-) 0 (-) >0.05
rs150336817 chr3:182805362 MCCC1 C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs7646607 chr3:182863473 LAMP3 C - 13 A vs. G - - >1 (-) 11 (-) >0.05
rs150281598 chr3:182797908 MCCC1 C - 4 T vs. C - - <1 (-) 10 (-) >0.05
rs831245 chr3:182910092 MCF2L2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs639690 chr3:182910607 MCF2L2 C - 13 T vs. C 0.1 (C) 0.0 (C) >1 (-) 0 (-) >0.05
rs651738 chr3:182834043 MCCC1 [+180bp] C - 13 C vs. G 0.075 (G) 0.208 (G) <1 (-) 47 (-) >0.05
rs7640027 chr3:182861353 LAMP3 C - 13 C vs. G 0.1 (G) 0.067 (G) <1 (-) 33 (-) >0.05
rs682396 chr3:182870082 LAMP3 C - 13 A vs. G 0.1 (G) 0.075 (G) <1 (-) 23 (-) >0.05
rs142439586 chr3:182865138 LAMP3 C - 7 A vs. G - - >1 (-) 7 (-) >0.05
rs684703 chr3:182869582 LAMP3 C - 13 A vs. G 0.1 (A) 0.092 (A) >1 (-) 24 (-) >0.05
rs114543488 chr3:182878057 LAMP3 C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs12495806 chr3:182807992 MCCC1 C - 13 T vs. G 0.033 (T) 0.142 (T) >1 (-) 30 (-) >0.05
rs4544646 chr3:182836084 MCCC1 [+2221bp] C - 13 T vs. C - - <1 (-) 42 (-) >0.05
rs9838514 chr3:182809593 MCCC1 C - 13 A vs. G - 0.083 (G) <1 (-) 30 (-) >0.05
rs598002 chr3:182845925 LAMP3 C - 13 C vs. G - - >1 (-) 43 (-) >0.05
rs4063930 chr3:182836745 MCCC1 [+2882bp] C - 13 C vs. G 0.067 (C) - >1 (-) 43 (-) >0.05
rs2314735 chr3:182836561 MCCC1 [+2698bp] C - 13 T vs. C - - >1 (-) 43 (-) >0.05
rs831255 chr3:182836242 MCCC1 [+2379bp] C - 13 A vs. G - - <1 (-) 43 (-) >0.05
rs650855 chr3:182834205 MCCC1 [+342bp] C - 13 T vs. C 0.067 (T) 0.208 (T) >1 (-) 44 (-) >0.05
rs583620 chr3:182845096 LAMP3 C - 13 A vs. C 0.067 (C) 0.217 (C) <1 (-) 40 (-) >0.05
rs4361307 chr3:182836966 LAMP3 [-3035bp] C - 13 T vs. C 0.067 (T) 0.208 (T) >1 (-) 42 (-) >0.05
rs12498020 chr3:182800575 MCCC1 C - 13 A vs. G 0.033 (A) 0.142 (A) >1 (-) 32 (-) >0.05
rs7614408 chr3:182836994 LAMP3 [-3007bp] C - 13 C vs. G 0.067 (C) 0.208 (C) >1 (-) 42 (-) >0.05
rs7622479 chr3:182790249 MCCC1 C - 13 A vs. G 0.075 (G) 0.0 (G) <1 (-) 11 (-) >0.05
rs12497989 chr3:182800521 MCCC1 C - 13 A vs. G 0.033 (A) 0.142 (A) >1 (-) 32 (-) >0.05
rs684708 chr3:182869577 LAMP3 C - 13 A vs. C 0.108 (A) 0.092 (A) >1 (-) 23 (-) >0.05
rs553629 chr3:182838509 LAMP3 [-1492bp] C - 13 A vs. G 0.067 (G) 0.208 (G) <1 (-) 41 (-) >0.05
rs6782692 chr3:182791848 MCCC1 C - 13 A vs. G 0.058 (G) 0.0 (G) <1 (-) 12 (-) >0.05
rs74997262 chr3:182865508 LAMP3 C - 9 T vs. C 0.042 (C) - <1 (-) 32 (-) >0.05
rs77672120 chr3:182799139 MCCC1 C - 13 T vs. C 0.033 (T) 0.142 (T) >1 (-) 32 (-) >0.05
rs580788 chr3:182834168 MCCC1 [+305bp] C - 13 A vs. G 0.067 (A) 0.208 (A) >1 (-) 44 (-) >0.05
rs2134429 chr3:182832537 MCCC1 C - 13 C vs. G 0.067 (G) 0.208 (G) <1 (-) 44 (-) >0.05
rs685585 chr3:182869364 LAMP3 C - 13 T vs. C - - <1 (-) 23 (-) >0.05
rs578111 chr3:182833857 MCCC1 C - 13 A vs. G 0.067 (A) 0.208 (A) >1 (-) 44 (-) >0.05
rs597628 chr3:182845878 LAMP3 C - 13 A vs. G - - >1 (-) 41 (-) >0.05
rs79456945 chr3:182798883 MCCC1 C - 13 A vs. G 0.033 (A) 0.142 (A) >1 (-) 32 (-) >0.05
rs4859155 chr3:182813852 MCCC1 C - 13 A vs. G 0.025 (A) 0.0 (A) >1 (-) 2 (-) >0.05
rs4308303 chr3:182837127 LAMP3 [-2874bp] C - 13 A vs. G 0.092 (A) 0.208 (A) >1 (-) 42 (-) >0.05
rs481410 chr3:182869109 LAMP3 C - 13 A vs. T 0.1 (T) 0.092 (T) <1 (-) 25 (-) >0.05
rs6414500 chr3:182871299 LAMP3 C - 13 T vs. G 0.1 (T) 0.092 (T) >1 (-) 25 (-) >0.05
rs6762481 chr3:182870788 LAMP3 C - 13 T vs. C - - <1 (-) 26 (-) >0.05
rs6443850 chr3:182790666 MCCC1 C - 13 C vs. G 0.058 (G) 0.0 (G) <1 (-) 11 (-) >0.05
rs564468 chr3:182868431 LAMP3 C - 13 A vs. G 0.1 (A) 0.092 (A) >1 (-) 26 (-) >0.05

Association studies for this region [+]