LAMP3, chr3:182840001-182881627 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11711441 chr3:182821275 MCCC1 All: C 108,990 15 A vs. G 0.2 (A) 0.25 (A) 0.83 (0.79-0.87) 0 (0-53) 2.54e-14
Meta_image?name=rs11711441

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs605719 chr3:182848606 LAMP3 C - 13 C vs. G 0.075 (C) 0.217 (C) >1 (-) 33 (-) >0.05
rs548124 chr3:182848550 LAMP3 C - 13 A vs. C 0.075 (C) 0.217 (C) <1 (-) 33 (-) >0.05
rs115021642 chr3:182806444 MCCC1 C - 13 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05
rs602586 chr3:182847909 LAMP3 C - 13 A vs. G 0.075 (A) 0.217 (A) >1 (-) 34 (-) >0.05
rs9878235 chr3:182881941 LAMP3 [+314bp] C - 13 A vs. G - - >1 (-) 12 (-) >0.05
rs501833 chr3:182877926 LAMP3 C - 13 C vs. G 0.117 (G) 0.058 (G) <1 (-) 5 (-) >0.05
rs114857001 chr3:182878959 LAMP3 C - 6 A vs. G 0.017 (A) - >1 (-) 37 (-) >0.05
rs500193 chr3:182846387 LAMP3 C - 13 T vs. C 0.075 (C) 0.208 (C) <1 (-) 33 (-) >0.05
rs620722 chr3:182896898 MCF2L2 C - 13 A vs. G 0.117 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs522838 chr3:182882530 LAMP3 [+903bp] C - 13 C vs. G 0.208 (C) 0.5 (C) <1 (-) 16 (-) >0.05
rs619424 chr3:182896660 MCF2L2 C - 13 T vs. G 0.117 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs10937114 chr3:182884361 LAMP3 [+2734bp] C - 13 T vs. C - - <1 (-) 22 (-) >0.05
rs80243937 chr3:182857654 LAMP3 C - 13 T vs. G - 0.058 (G) <1 (-) 0 (-) >0.05
rs148584136 chr3:182870351 LAMP3 C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs74285558 chr3:182857261 LAMP3 C - 13 T vs. C 0.033 (T) 0.067 (T) >1 (-) 0 (-) >0.05
rs602646 chr3:182880715 LAMP3 C - 13 C vs. G 0.2 (G) 0.383 (G) >1 (-) 19 (-) >0.05
rs614566 chr3:182847390 LAMP3 C - 13 A vs. C 0.075 (A) 0.217 (A) >1 (-) 30 (-) >0.05
rs648488 chr3:182851259 LAMP3 C - 13 T vs. C 0.125 (C) 0.283 (C) <1 (-) 30 (-) >0.05
rs598689 chr3:182861572 LAMP3 C - 13 A vs. G 0.092 (A) 0.225 (A) >1 (-) 43 (-) >0.05
rs3736551 chr3:182853212 LAMP3 C - 13 T vs. C 0.125 (T) 0.283 (T) >1 (-) 30 (-) >0.05
rs13091371 chr3:182909788 MCF2L2 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs76825906 chr3:182844832 LAMP3 C - 13 T vs. C 0.033 (C) 0.067 (C) <1 (-) 2 (-) >0.05
rs6804025 chr3:182909243 MCF2L2 C - 12 T vs. G 0.292 (G) 0.475 (G) >1 (-) 0 (-) >0.05
rs658672 chr3:182877292 LAMP3 C - 13 T vs. C 0.208 (T) 0.425 (T) >1 (-) 24 (-) >0.05
rs515043 chr3:182852468 LAMP3 C - 13 C vs. G 0.142 (G) 0.292 (G) <1 (-) 29 (-) >0.05
rs146035017 chr3:182928773 MCF2L2 C - 5 A vs. G - - >1 (-) 0 (-) >0.05
rs12495102 chr3:182854956 LAMP3 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs12488681 chr3:182854942 LAMP3 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs74856575 chr3:182853193 LAMP3 C - 13 A vs. G 0.033 (G) 0.067 (G) <1 (-) 0 (-) >0.05
rs150718651 chr3:182842581 LAMP3 C - 13 T vs. C - - <1 (-) 5 (-) >0.05
rs7649326 chr3:182885228 LAMP3 [+3601bp] C - 10 T vs. C - - >1 (-) 28 (-) >0.05
rs138054053 chr3:182927353 MCF2L2 C - 6 T vs. C - - <1 (-) 0 (-) >0.05
rs112332909 chr3:182865604 LAMP3 C - 9 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs80179622 chr3:182823898 MCCC1 C - 13 A vs. G 0.017 (G) 0.067 (G) <1 (-) 26 (-) >0.05
rs685735 chr3:182891167 MCF2L2 [-4664bp] C - 13 A vs. G 0.125 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs623712 chr3:182835666 MCCC1 [+1803bp] C - 13 T vs. C 0.058 (T) 0.0 (T) >1 (-) 32 (-) >0.05
rs7649244 chr3:182834095 MCCC1 [+232bp] C - 13 T vs. C 0.033 (T) 0.075 (T) >1 (-) 12 (-) >0.05
rs76769572 chr3:182833710 MCCC1 C - 13 A vs. G - 0.067 (G) <1 (-) 12 (-) >0.05
rs146421846 chr3:182835866 MCCC1 [+2003bp] C - 13 T vs. C - - >1 (-) 11 (-) >0.05
rs831246 chr3:182891880 MCF2L2 [-3951bp] C - 13 T vs. C 0.117 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs496251 chr3:182891376 MCF2L2 [-4455bp] C - 13 A vs. G 0.117 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs831247 chr3:182891900 MCF2L2 [-3931bp] C - 13 C vs. G 0.117 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs3821518 chr3:182850229 LAMP3 C - 13 T vs. C 0.025 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs494377 chr3:182891166 MCF2L2 [-4665bp] C - 13 T vs. C 0.125 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs1995428 chr3:182874685 LAMP3 C - 13 T vs. C 0.058 (C) - >1 (-) 29 (-) >0.05
rs471365 chr3:182890994 MCF2L2 [-4837bp] C - 13 C vs. G 0.1 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs831249 chr3:182892091 MCF2L2 [-3740bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs73886251 chr3:182873864 LAMP3 C - 13 A vs. T 0.058 (A) - <1 (-) 29 (-) >0.05
rs6443858 chr3:182891718 MCF2L2 [-4113bp] C - 13 C vs. G 0.125 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs6443857 chr3:182891709 MCF2L2 [-4122bp] C - 13 A vs. T 0.125 (A) - <1 (-) 0 (-) >0.05

Association studies for this region [+]