LCT, chr2:136545410-136594750 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
Meta_image?name=rs4988235

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
rs182549 chr2:136616754 MCM6 All: C 108,544 14 C vs. T 0.225 (C) - 0.90 (0.86-0.93) 0 (0-47) 9.41e-09
rs10173394 chr2:136522675 UBXN4 All: C 108,544 14 C vs. T 0.192 (C) 0.425 (T) 0.90 (0.87-0.94) 0 (0-52) 6.35e-08
rs10192827 chr2:136521514 UBXN4 All: C 108,544 14 A vs. G - - 1.11 (1.07-1.15) 0 (0-53) 6.49e-08
rs1438307 chr2:136499166 UBXN4 [-23bp] All: C 108,544 14 G vs. T 0.192 (G) 0.433 (T) 0.90 (0.87-0.94) 3 (0-57) 8.06e-08
rs28453840 chr2:136522941 UBXN4 All: C 108,544 14 A vs. G - - 1.11 (1.07-1.16) 0 (0-54) 8.45e-08
rs160329 chr2:136617805 MCM6 All: C 108,990 15 T vs. C - - 1.11 (1.07-1.15) 0 (0-36) 8.57e-08
rs10928546 chr2:136544197 LCT [-1213bp] All: C 108,544 14 T vs. C - - 1.11 (1.07-1.15) 0 (0-52) 8.64e-08
rs11684545 chr2:136539122 UBXN4 All: C 108,544 14 G vs. T 0.192 (G) 0.442 (T) 0.90 (0.87-0.94) 0 (0-54) 9.21e-08
rs309125 chr2:136643555 MCM6 [+9559bp] All: C 108,990 15 T vs. C 0.183 (T) 0.392 (C) 0.91 (0.87-0.94) 0 (0-33) 9.96e-08
rs71348715 chr2:136535410 UBXN4 All: C 108,544 14 T vs. G - - 1.11 (1.07-1.15) 0 (0-54) 1.01e-07
rs3213889 chr2:136511575 UBXN4 All: C 108,544 14 A vs. G 0.192 (A) 0.433 (G) 0.90 (0.87-0.94) 0 (0-54) 1.13e-07
rs12998387 chr2:136507039 UBXN4 All: C 108,544 14 A vs. G 0.2 (A) 0.442 (G) 0.90 (0.87-0.94) 0 (0-55) 1.29e-07
rs1438304 chr2:136503157 UBXN4 All: C 108,544 14 A vs. G 0.2 (A) 0.442 (G) 0.90 (0.87-0.94) 4 (0-57) 1.40e-07
rs12998016 chr2:136551694 LCT All: C 108,544 14 T vs. C - - 1.11 (1.07-1.15) 0 (0-54) 1.46e-07
rs309179 chr2:136613780 MCM6 All: C 108,990 15 G vs. A 0.183 (G) 0.383 (A) 0.91 (0.87-0.94) 0 (0-39) 1.51e-07
rs309176 chr2:136622216 MCM6 All: C 108,990 15 T vs. C 0.183 (T) 0.392 (C) 0.91 (0.87-0.94) 0 (0-36) 1.59e-07
rs309180 chr2:136614255 MCM6 All: C 108,990 15 G vs. A 0.183 (G) 0.375 (A) 0.91 (0.87-0.94) 0 (0-37) 1.65e-07
rs680428 chr2:136630757 MCM6 All: C 108,990 15 A vs. G 0.183 (A) 0.383 (G) 0.91 (0.87-0.94) 0 (0-35) 1.65e-07
rs1011361 chr2:136553639 LCT All: C 108,544 14 G vs. A 0.175 (G) 0.45 (A) 0.90 (0.87-0.94) 0 (0-54) 1.66e-07
rs309128 chr2:136629911 MCM6 All: C 108,990 15 A vs. G - - 1.10 (1.06-1.15) 0 (0-34) 1.67e-07
rs309173 chr2:136617524 MCM6 All: C 108,990 15 T vs. C - - 1.10 (1.06-1.15) 0 (0-37) 1.71e-07
rs188680 chr2:136630989 MCM6 All: C 108,990 15 A vs. G 0.183 (A) 0.383 (G) 0.91 (0.87-0.94) 0 (0-34) 1.73e-07
rs309130 chr2:136631031 MCM6 All: C 108,990 15 C vs. A 0.183 (C) 0.383 (A) 0.91 (0.87-0.94) 0 (0-34) 1.78e-07
rs4988226 chr2:136610598 MCM6 All: C 108,990 15 A vs. G 0.183 (A) 0.392 (G) 0.91 (0.87-0.94) 0 (0-40) 1.91e-07
rs309178 chr2:136611624 MCM6 All: C 108,990 15 C vs. T 0.183 (C) 0.383 (T) 0.91 (0.87-0.94) 0 (0-40) 1.92e-07
rs191079 chr2:136633771 MCM6 All: C 108,990 15 C vs. T 0.167 (C) 0.417 (T) 0.91 (0.87-0.94) 0 (0-34) 2.01e-07
rs55830620 chr2:136636324 MCM6 [+2328bp] All: C 108,990 15 A vs. G - - 1.10 (1.06-1.15) 0 (0-35) 2.08e-07
rs632632 chr2:136638216 MCM6 [+4220bp] All: C 108,990 15 C vs. T 0.183 (C) 0.392 (T) 0.91 (0.87-0.94) 0 (0-34) 2.24e-07
rs4954493 chr2:136609975 MCM6 All: C 108,990 15 T vs. C 0.183 (T) 0.383 (C) 0.91 (0.87-0.94) 0 (0-40) 3.34e-07
rs4954490 chr2:136608231 MCM6 All: C 108,990 15 G vs. A 0.175 (G) 0.408 (A) 0.91 (0.87-0.94) 0 (0-40) 3.44e-07
rs3754686 chr2:136603276 MCM6 All: C 108,990 15 T vs. C 0.175 (T) 0.392 (C) 0.91 (0.87-0.94) 0 (0-41) 4.09e-07
rs666407 chr2:136640233 MCM6 [+6237bp] All: C 108,990 15 G vs. A 0.183 (G) 0.392 (A) 0.91 (0.88-0.94) 0 (0-34) 5.08e-07
rs2082729 chr2:136550109 LCT All: C 108,544 14 C vs. T 0.167 (C) 0.442 (T) 0.91 (0.87-0.94) 0 (0-55) 5.22e-07
rs112742092 chr2:136591178 LCT All: C 108,544 14 G vs. A - - 1.10 (1.06-1.15) 0 (0-45) 5.33e-07
rs2236783 chr2:136594158 LCT All: C 108,990 15 G vs. A 0.175 (G) 0.383 (A) 0.91 (0.88-0.94) 0 (0-41) 6.60e-07
rs6742283 chr2:136596867 MCM6 [-329bp] All: C 108,990 15 G vs. A - - 1.10 (1.06-1.14) 0 (0-39) 7.04e-07
rs745500 chr2:136583192 LCT All: C 108,990 15 G vs. A 0.175 (G) 0.45 (A) 0.91 (0.88-0.95) 0 (0-45) 7.10e-07
rs7569057 chr2:136583958 LCT All: C 108,990 15 C vs. A 0.175 (C) 0.442 (A) 0.91 (0.88-0.95) 0 (0-45) 7.18e-07
rs6719488 chr2:136575199 LCT All: C 108,990 15 G vs. T 0.175 (G) 0.442 (T) 0.91 (0.88-0.95) 0 (0-45) 8.48e-07
rs4954450 chr2:136578536 LCT All: C 108,990 15 C vs. T - - 1.10 (1.06-1.14) 0 (0-45) 8.63e-07
rs10186843 chr2:136586958 LCT All: C 108,990 15 C vs. A 0.2 (C) 0.433 (A) 0.91 (0.88-0.95) 0 (0-44) 8.66e-07
rs892715 chr2:136576577 LCT All: C 108,990 15 T vs. C 0.175 (T) 0.442 (C) 0.91 (0.88-0.95) 0 (0-48) 8.67e-07
rs2164210 chr2:136580287 LCT All: C 108,990 15 T vs. C 0.175 (T) 0.442 (C) 0.91 (0.88-0.95) 0 (0-46) 8.82e-07
rs12988076 chr2:136569848 LCT All: C 108,990 15 C vs. A 0.175 (C) 0.45 (A) 0.91 (0.88-0.95) 0 (0-46) 1.00e-06
rs62159034 chr2:136591859 LCT All: C 108,990 15 A vs. G - - 1.10 (1.06-1.14) 0 (0-40) 1.01e-06
rs2322660 chr2:136557319 LCT All: C 108,990 15 C vs. T 0.175 (C) 0.433 (T) 0.91 (0.88-0.95) 0 (0-44) 1.09e-06
rs748841 chr2:136558157 LCT All: C 108,990 15 C vs. T 0.175 (C) 0.433 (T) 0.91 (0.88-0.95) 0 (0-45) 1.09e-06
rs9287442 chr2:136522710 UBXN4 All: C 101,639 13 A vs. G 0.175 (A) 0.5 (A) 0.90 (0.87-0.94) 0 (0-53) 1.72e-06
rs3820794 chr2:136505546 UBXN4 All: C 108,544 14 C vs. T 0.183 (C) 0.325 (C) 0.91 (0.87-0.95) 0 (0-49) 2.19e-06

Association studies for this region [+]