LCT, chr2:136545410-136594750 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
Meta_image?name=rs4988235

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7556781 chr2:136506375 UBXN4 All: C 108,544 14 A vs. G - - 1.11 (1.06-1.15) 0 (-) 2.19e-06
rs10188066 chr2:136539513 UBXN4 All: C 108,544 14 G vs. A 0.183 (G) 0.325 (G) 0.91 (0.88-0.95) 0 (0-54) 2.29e-06
rs6730196 chr2:136593760 LCT All: C 108,990 15 G vs. T - - 1.10 (1.06-1.14) 0 (0-43) 2.35e-06
rs2278544 chr2:136546110 LCT All: C 108,544 14 A vs. G 0.167 (A) 0.5 (A) 0.91 (0.87-0.95) 0 (0-54) 2.42e-06
rs4988183 chr2:136622046 MCM6 All: C 108,990 15 C vs. T 0.183 (C) 0.383 (C) 0.91 (0.88-0.95) 0 (0-41) 2.44e-06
rs1030764 chr2:136553529 LCT All: C 108,544 14 T vs. C - - 1.10 (1.06-1.14) 0 (0-54) 2.70e-06
rs6760329 chr2:136544752 LCT [-658bp] All: C 108,544 14 A vs. G 0.167 (A) 0.325 (A) 0.91 (0.88-0.95) 0 (0-53) 3.15e-06
rs60963894 chr2:136539670 UBXN4 All: C 108,544 14 G vs. T 0.167 (G) 0.167 (G) 0.91 (0.87-0.95) 0 (0-6) 3.21e-06
rs10496737 chr2:136540083 UBXN4 All: C 108,544 14 G vs. A 0.167 (G) 0.158 (G) 0.91 (0.87-0.95) 0 (0-4) 3.25e-06
rs1865452 chr2:136539330 UBXN4 All: C 108,544 14 T vs. C 0.15 (T) 0.158 (T) 0.91 (0.87-0.95) 0 (0-9) 3.60e-06
rs147616090 chr2:136530443 UBXN4 All: C 108,544 14 C vs. T - - 1.10 (1.06-1.15) 0 (0-3) 3.89e-06
rs7589832 chr2:136504101 UBXN4 All: C 108,544 14 C vs. A 0.167 (C) 0.158 (C) 0.91 (0.87-0.95) 0 (-) 4.41e-06
rs6732236 chr2:136501509 UBXN4 All: C 108,544 14 G vs. T 0.158 (G) 0.167 (G) 0.91 (0.87-0.95) 0 (-) 4.47e-06
rs12469551 chr2:136510012 UBXN4 All: C 108,544 14 T vs. G 0.167 (T) 0.192 (T) 0.91 (0.87-0.95) 0 (-) 4.52e-06
rs7595712 chr2:136509868 UBXN4 All: C 108,544 14 C vs. T - - 1.10 (1.06-1.15) 0 (-) 4.61e-06
rs10928545 chr2:136501840 UBXN4 All: C 108,544 14 A vs. G 0.175 (A) 0.492 (G) 0.91 (0.88-0.95) 0 (0-54) 5.08e-06
rs6430585 chr2:136506927 UBXN4 All: C 108,544 14 A vs. C 0.158 (A) 0.192 (A) 0.91 (0.87-0.95) 0 (-) 5.45e-06
rs73958618 chr2:136500475 UBXN4 All: C 108,544 14 G vs. A 0.158 (G) 0.167 (G) 0.91 (0.87-0.95) 0 (-) 7.27e-06
rs1470457 chr2:136581848 LCT All: C 108,990 15 G vs. A 0.175 (G) 0.342 (G) 0.92 (0.88-0.95) 0 (0-44) 1.03e-05
rs148453066 chr2:136530379 UBXN4 All: C 108,544 14 C vs. T - - 1.10 (1.05-1.15) 0 (0-12) 1.15e-05
rs3739020 chr2:136602491 MCM6 All: C 108,990 15 G vs. T 0.15 (G) 0.408 (G) 0.92 (0.88-0.95) 0 (0-43) 1.45e-05
rs2322659 chr2:136555659 LCT All: C 108,544 14 T vs. C 0.175 (T) 0.492 (C) 0.92 (0.89-0.96) 0 (0-51) 4.80e-05
rs1435576 chr2:136641882 MCM6 [+7886bp] C - 13 A vs. T 0.183 (T) 0.383 (A) >1 (-) 0 (-) <1.00e-04
rs309181 chr2:136614813 MCM6 C - 13 C vs. G 0.2 (C) 0.383 (G) <1 (-) 0 (-) <1.00e-04
rs12994270 chr2:136518103 UBXN4 C - 12 A vs. T 0.192 (T) 0.433 (A) >1 (-) 12 (-) <1.00e-04
rs3769005 chr2:136603366 MCM6 C - 13 C vs. G 0.175 (C) 0.383 (G) <1 (-) 0 (-) <1.00e-04
rs10195620 chr2:136495619 UBXN4 [-3570bp] C - 13 A vs. T 0.183 (A) 0.433 (T) <1 (-) 11 (-) <1.00e-04
rs1030765 chr2:136553188 LCT C - 12 A vs. T 0.192 (A) - <1 (-) 7 (-) <0.05
rs1438305 chr2:136502792 UBXN4 C - 12 C vs. G 0.183 (C) 0.433 (G) <1 (-) 18 (-) <0.05
rs10207652 chr2:136588478 LCT C - 13 A vs. T 0.175 (T) 0.433 (A) >1 (-) 0 (-) <0.05
rs12620033 chr2:136589612 LCT C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs7579771 chr2:136580260 LCT C - 13 A vs. T 0.175 (A) 0.442 (T) <1 (-) 0 (-) <0.05
rs12616520 chr2:136516748 UBXN4 C - 12 A vs. T 0.183 (A) 0.483 (A) <1 (-) 10 (-) <0.05
rs2304599 chr2:136528004 UBXN4 C - 12 C vs. G 0.175 (C) 0.308 (C) <1 (-) 9 (-) <0.05
rs9677760 chr2:136538939 UBXN4 C - 12 A vs. T 0.158 (T) 0.183 (T) >1 (-) 0 (-) <0.05
rs60453613 chr2:136527120 UBXN4 C - 12 C vs. G 0.15 (C) 0.158 (C) <1 (-) 0 (-) <0.05
rs78364332 chr2:136640101 MCM6 [+6105bp] C - 12 T vs. C 0.117 (C) 0.1 (C) >1 (-) 0 (-) <0.05
rs4988145 chr2:136632300 MCM6 C - 12 A vs. C 0.117 (C) 0.133 (C) >1 (-) 0 (-) <0.05
rs7561565 chr2:136640787 MCM6 [+6791bp] C - 12 T vs. G 0.117 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs79176913 chr2:136638113 MCM6 [+4117bp] C - 12 A vs. C 0.117 (A) 0.133 (A) <1 (-) 0 (-) <0.05
rs7581814 chr2:136641593 MCM6 [+7597bp] C - 12 C vs. G 0.117 (G) 0.125 (G) >1 (-) 0 (-) <0.05
rs6728946 chr2:136635343 MCM6 [+1347bp] C - 12 C vs. G 0.117 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs1057031 chr2:136633962 MCM6 C - 12 A vs. G 0.108 (A) 0.158 (A) <1 (-) 0 (-) <0.05
rs4988274 chr2:136600662 MCM6 C - 12 A vs. T 0.108 (A) 0.117 (A) <1 (-) 0 (-) <0.05
rs4594504 chr2:136625113 MCM6 C - 12 A vs. C 0.117 (C) 0.133 (C) >1 (-) 0 (-) <0.05
rs4988163 chr2:136628121 MCM6 C - 12 T vs. G 0.117 (T) 0.142 (T) <1 (-) 0 (-) <0.05
rs4988201 chr2:136618507 MCM6 C - 12 A vs. G 0.117 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs3769001 chr2:136626078 MCM6 C - 12 A vs. G 0.117 (G) 0.125 (G) >1 (-) 0 (-) <0.05
rs1435577 chr2:136624947 MCM6 C - 12 C vs. G 0.117 (G) 0.117 (G) >1 (-) 0 (-) <0.05
rs3087343 chr2:136622543 MCM6 C - 12 T vs. G 0.117 (G) 0.133 (G) >1 (-) 0 (-) <0.05

Association studies for this region [+]