LCT, chr2:136545410-136594750 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
Meta_image?name=rs4988235

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs61253125 chr2:136618178 MCM6 C - 12 T vs. C 0.117 (C) 0.125 (C) >1 (-) 0 (-) <0.05
rs12474093 chr2:136617477 MCM6 C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs62168843 chr2:136496493 UBXN4 [-2696bp] C - 13 T vs. C 0.067 (C) 0.15 (C) >1 (-) 10 (-) <0.05
rs111837148 chr2:136612036 MCM6 C - 12 A vs. G 0.117 (A) 0.108 (A) <1 (-) 0 (-) <0.05
rs62168844 chr2:136496639 UBXN4 [-2550bp] C - 13 A vs. G 0.067 (G) 0.108 (G) >1 (-) 12 (-) <0.05
rs35215526 chr2:136496805 UBXN4 [-2384bp] C - 13 A vs. G 0.067 (A) 0.133 (A) <1 (-) 11 (-) <0.05
rs62168846 chr2:136496910 UBXN4 [-2279bp] C - 13 A vs. G 0.067 (A) 0.133 (A) <1 (-) 12 (-) <0.05
rs12475516 chr2:136560761 LCT C - 12 C vs. G 0.117 (G) 0.158 (G) >1 (-) 0 (-) <0.05
rs62168847 chr2:136496928 UBXN4 [-2261bp] C - 13 T vs. C 0.067 (C) 0.15 (C) >1 (-) 12 (-) <0.05
rs2304371 chr2:136561557 LCT C - 12 A vs. G 0.117 (G) 0.158 (G) >1 (-) 0 (-) <0.05
rs2304370 chr2:136561735 LCT C - 12 A vs. G 0.117 (A) 0.158 (A) <1 (-) 0 (-) <0.05
rs76097170 chr2:136593498 LCT C - 12 T vs. C 0.117 (T) 0.3 (T) <1 (-) 0 (-) <0.05
rs56064699 chr2:136595706 LCT [+956bp] C - 12 A vs. G 0.108 (A) 0.142 (A) <1 (-) 0 (-) <0.05
rs11895319 chr2:136593678 LCT C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs73958638 chr2:136547067 LCT C - 13 A vs. G 0.025 (G) 0.15 (G) >1 (-) 0 (-) <0.05
rs60253740 chr2:136571852 LCT C - 12 T vs. G 0.117 (T) 0.1 (T) <1 (-) 0 (-) <0.05
rs61240933 chr2:136572285 LCT C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs3769012 chr2:136556480 LCT C - 12 A vs. G 0.117 (A) 0.092 (A) <1 (-) 0 (-) <0.05
rs3769013 chr2:136556182 LCT C - 12 T vs. C 0.117 (T) 0.108 (T) <1 (-) 0 (-) <0.05
rs3769008 chr2:136586183 LCT C - 12 T vs. C 0.117 (T) 0.108 (T) <1 (-) 0 (-) <0.05
rs2322813 chr2:136582809 LCT C - 12 A vs. G 0.117 (G) 0.1 (G) >1 (-) 0 (-) <0.05
rs58116536 chr2:136585323 LCT C - 12 T vs. C 0.117 (T) 0.108 (T) <1 (-) 0 (-) <0.05
rs58509842 chr2:136586027 LCT C - 12 A vs. G 0.117 (A) 0.1 (A) <1 (-) 0 (-) <0.05
rs59243420 chr2:136584538 LCT C - 12 A vs. T 0.117 (T) 0.067 (T) >1 (-) 0 (-) <0.05
rs730005 chr2:136582694 LCT C - 12 T vs. C 0.117 (C) 0.092 (C) >1 (-) 0 (-) <0.05
rs12475398 chr2:136560464 LCT C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs73957037 chr2:136588031 LCT C - 12 A vs. C 0.117 (A) 0.3 (A) <1 (-) 0 (-) <0.05
rs11886852 chr2:136589379 LCT C - 12 A vs. G 0.117 (A) 0.3 (A) <1 (-) 0 (-) <0.05
rs9636213 chr2:136589278 LCT C - 12 A vs. G 0.117 (G) 0.3 (G) >1 (-) 0 (-) <0.05
rs75205078 chr2:136554120 LCT C - 9 T vs. C - - >1 (-) 0 (-) <0.05
rs60433564 chr2:136535364 UBXN4 C - 13 A vs. C - - >1 (-) 0 (-) <0.05
rs61451678 chr2:136589741 LCT C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs55809728 chr2:136600176 MCM6 C - 13 A vs. G 0.058 (A) 0.2 (A) <1 (-) 0 (-) <0.05
rs1963885 chr2:136553022 LCT C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs1807356 chr2:136555484 LCT C - 13 T vs. C 0.067 (C) 0.242 (C) >1 (-) 0 (-) <0.05
rs2015532 chr2:136555525 LCT C - 12 T vs. G 0.117 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs7565053 chr2:136552629 LCT C - 13 A vs. T 0.05 (T) 0.158 (T) >1 (-) 0 (-) <0.05
rs76889783 chr2:136580744 LCT C - 12 T vs. C 0.025 (T) - <1 (-) 0 (-) <0.05
rs62170081 chr2:136524766 UBXN4 C - 13 A vs. G 0.033 (G) 0.15 (G) >1 (-) 0 (-) <0.05
rs3213890 chr2:136552188 LCT C - 12 A vs. G 0.117 (A) 0.142 (A) <1 (-) 0 (-) <0.05
rs2164212 chr2:136551537 LCT C - 12 A vs. T - - >1 (-) 0 (-) <0.05
rs3816155 chr2:136552526 LCT C - 12 A vs. C 0.125 (A) 0.175 (A) <1 (-) 0 (-) <0.05
rs73958637 chr2:136546927 LCT C - 12 T vs. C 0.117 (T) 0.142 (T) <1 (-) 0 (-) <0.05
rs4954430 chr2:136553925 LCT C - 13 T vs. C 0.05 (T) 0.125 (T) <1 (-) 0 (-) <0.05
rs6430588 chr2:136554797 LCT C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs56982689 chr2:136553438 LCT C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs746857 chr2:136554890 LCT C - 12 A vs. G 0.117 (G) 0.2 (G) >1 (-) 0 (-) <0.05
rs1042712 chr2:136545844 LCT C - 12 C vs. G 0.117 (C) 0.175 (C) <1 (-) 0 (-) <0.05
rs77681363 chr2:136560126 LCT C - 12 T vs. C 0.025 (T) - <1 (-) 0 (-) <0.05
rs115944351 chr2:136515458 UBXN4 C - 12 A vs. G 0.133 (A) 0.117 (A) <1 (-) 0 (-) <0.05

Association studies for this region [+]