LCT, chr2:136545410-136594750 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
Meta_image?name=rs4988235

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6724569 chr2:136516970 UBXN4 C - 12 A vs. G 0.133 (A) 0.142 (A) <1 (-) 0 (-) <0.05
rs6716070 chr2:136544651 LCT [-759bp] C - 12 T vs. G 0.125 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs140159081 chr2:136553713 LCT C - 3 T vs. G - - >1 (-) 0 (-) <0.05
rs147766238 chr2:136554085 LCT C - 3 A vs. T - - >1 (-) 0 (-) <0.05
rs58301703 chr2:136532225 UBXN4 C - 12 A vs. G 0.125 (A) 0.142 (A) <1 (-) 0 (-) <0.05
rs1050115 chr2:136511817 UBXN4 C - 12 A vs. G 0.133 (G) 0.142 (G) >1 (-) 0 (-) <0.05
rs144353356 chr2:136544423 LCT [-987bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs2304601 chr2:136528034 UBXN4 C - 12 A vs. C 0.117 (A) 0.142 (A) <1 (-) 0 (-) <0.05
rs139068486 chr2:136535235 UBXN4 C - 12 A vs. T - - <1 (-) 0 (-) <0.05
rs3754689 chr2:136590746 LCT C - 11 T vs. C 0.117 (T) 0.3 (T) <1 (-) 0 (-) <0.05
rs75223002 chr2:136525309 UBXN4 C - 12 T vs. G 0.1 (T) 0.117 (T) <1 (-) 0 (-) <0.05
rs12467770 chr2:136536095 UBXN4 C - 12 A vs. G 0.125 (A) 0.142 (A) <1 (-) 0 (-) <0.05
rs7607174 chr2:136513670 UBXN4 C - 12 A vs. T 0.133 (A) 0.158 (A) <1 (-) 0 (-) <0.05
rs72972104 chr2:136537057 UBXN4 C - 13 A vs. G 0.05 (A) 0.15 (A) <1 (-) 0 (-) <0.05
rs10496736 chr2:136536113 UBXN4 C - 13 C vs. G 0.033 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs16855656 chr2:136642433 MCM6 [+8437bp] C - 13 A vs. G 0.067 (G) 0.417 (G) >1 (-) 0 (-) <0.05
rs4954633 chr2:136546635 LCT C - 13 T vs. C 0.05 (T) 0.15 (T) <1 (-) 0 (-) <0.05
rs7609188 chr2:136511951 UBXN4 C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs6707289 chr2:136515924 UBXN4 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs872151 chr2:136556805 LCT C - 13 T vs. C 0.067 (T) 0.233 (T) <1 (-) 0 (-) <0.05
rs6729961 chr2:136520186 UBXN4 C - 13 T vs. G 0.05 (G) 0.15 (G) >1 (-) 0 (-) <0.05
rs16831994 chr2:136509573 UBXN4 C - 13 T vs. C 0.05 (C) 0.133 (C) >1 (-) 3 (-) <0.05
rs3213871 chr2:136615222 MCM6 C - 13 T vs. C 0.067 (T) 0.25 (T) <1 (-) 0 (-) <0.05
rs6720497 chr2:136515859 UBXN4 C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs56263017 chr2:136624919 MCM6 C - 13 T vs. C 0.067 (C) 0.233 (C) >1 (-) 0 (-) <0.05
rs60274701 chr2:136565328 LCT C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs143544739 chr2:136548123 LCT C - 10 A vs. G - - <1 (-) 46 (-) <0.05
rs55634455 chr2:136593694 LCT C - 13 T vs. C - - >1 (-) 0 (-) <0.05
rs56211644 chr2:136595426 LCT [+676bp] C - 13 T vs. C 0.017 (C) 0.258 (C) >1 (-) 0 (-) <0.05
rs7564577 chr2:136576166 LCT C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs78141345 chr2:136592309 LCT C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs4988243 chr2:136607703 MCM6 C - 13 T vs. C 0.033 (C) 0.142 (C) >1 (-) 0 (-) <0.05
rs4954513 chr2:136628380 MCM6 C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs56067372 chr2:136637622 MCM6 [+3626bp] C - 13 T vs. C 0.042 (T) 0.233 (T) <1 (-) 0 (-) <0.05
rs3754690 chr2:136590558 LCT C - 13 T vs. C 0.058 (T) 0.25 (T) <1 (-) 0 (-) <0.05
rs7608980 chr2:136636909 MCM6 [+2913bp] C - 13 A vs. G 0.067 (A) 0.242 (A) <1 (-) 0 (-) <0.05
rs309132 chr2:136633011 MCM6 C - 13 C vs. G 0.067 (G) 0.233 (G) >1 (-) 0 (-) <0.05
rs584226 chr2:136641382 MCM6 [+7386bp] C - 13 T vs. C 0.067 (C) 0.408 (C) >1 (-) 0 (-) <0.05
rs16832138 chr2:136637350 MCM6 [+3354bp] C - 13 A vs. G 0.067 (A) 0.25 (A) <1 (-) 0 (-) <0.05
rs309126 chr2:136643900 MCM6 [+9904bp] C - 13 T vs. C 0.058 (C) 0.425 (C) >1 (-) 0 (-) <0.05
rs115690847 chr2:136526772 UBXN4 C - 8 A vs. G - - >1 (-) 0 (-) <0.05
rs3769011 chr2:136570613 LCT C - 13 A vs. T 0.058 (T) 0.233 (T) >1 (-) 0 (-) <0.05
rs79954860 chr2:136563284 LCT C - 13 A vs. T 0.033 (T) 0.083 (T) >1 (-) 0 (-) <0.05
rs3769002 chr2:136626004 MCM6 C - 13 T vs. C 0.067 (C) 0.25 (C) >1 (-) 0 (-) <0.05
rs4988151 chr2:136631314 MCM6 C - 8 A vs. G 0.008 (G) - >1 (-) 47 (-) <0.05
rs60996006 chr2:136530391 UBXN4 C - 11 A vs. G - - <1 (-) 0 (-) <0.05
rs60376570 chr2:136580398 LCT C - 13 A vs. G 0.058 (A) 0.233 (A) <1 (-) 0 (-) <0.05
rs4988254 chr2:136606133 MCM6 C - 6 A vs. T - - <1 (-) 0 (-) <0.05
rs116434156 chr2:136574414 LCT C - 10 T vs. G 0.017 (T) - <1 (-) 49 (-) >0.05
rs2874874 chr2:136578194 LCT C - 12 A vs. C 0.058 (C) 0.242 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]