LCT, chr2:136545410-136594750 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
Meta_image?name=rs4988235

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs58080116 chr2:136574305 LCT C - 13 A vs. G 0.058 (G) 0.242 (G) >1 (-) 0 (-) >0.05
rs61470941 chr2:136560003 LCT C - 13 T vs. C 0.058 (C) 0.242 (C) >1 (-) 0 (-) >0.05
rs2322812 chr2:136578040 LCT C - 12 A vs. G 0.058 (G) 0.2 (G) >1 (-) 0 (-) >0.05
rs4954445 chr2:136571982 LCT C - 13 A vs. T 0.058 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs6708957 chr2:136520043 UBXN4 C - 12 T vs. C 0.167 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs3739022 chr2:136562472 LCT C - 13 A vs. G 0.058 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs12992815 chr2:136563248 LCT C - 13 C vs. G 0.058 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs72970251 chr2:136498283 UBXN4 [-906bp] C - 13 A vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
chr2:136545532 chr2:136545532 LCT C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs4988270 chr2:136602196 MCM6 C - 5 A vs. G - - >1 (-) 48 (-) >0.05
rs7563116 chr2:136495815 UBXN4 [-3374bp] C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs7563142 chr2:136495889 UBXN4 [-3300bp] C - 13 C vs. G - 0.058 (G) >1 (-) 0 (-) >0.05
rs16831992 chr2:136509460 UBXN4 C - 13 C vs. G - 0.067 (C) <1 (-) 0 (-) >0.05
rs12476116 chr2:136497199 UBXN4 [-1990bp] C - 12 A vs. G 0.108 (G) 0.142 (G) >1 (-) 0 (-) >0.05
rs111580108 chr2:136515721 UBXN4 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs111339455 chr2:136515801 UBXN4 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs72970289 chr2:136525463 UBXN4 C - 13 A vs. G 0.008 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs112306351 chr2:136524747 UBXN4 C - 13 A vs. G - 0.058 (G) >1 (-) 0 (-) >0.05
rs4988159 chr2:136629133 MCM6 C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs72970297 chr2:136532518 UBXN4 C - 13 T vs. G - 0.058 (G) >1 (-) 0 (-) >0.05
rs143494548 chr2:136554557 LCT C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs72972110 chr2:136542739 UBXN4 [+114bp] C - 13 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs78670352 chr2:136530739 UBXN4 C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs114607163 chr2:136522824 UBXN4 C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs4988218 chr2:136613461 MCM6 C - 12 T vs. C - 0.083 (C) >1 (-) 18 (-) >0.05
rs28476698 chr2:136542821 UBXN4 [+196bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs4988227 chr2:136610054 MCM6 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs6708729 chr2:136519862 UBXN4 C - 12 T vs. C 0.008 (T) 0.125 (T) <1 (-) 0 (-) >0.05
rs17653534 chr2:136510158 UBXN4 C - 9 C vs. G - - <1 (-) 0 (-) >0.05
rs72970275 chr2:136516011 UBXN4 C - 13 A vs. T - 0.067 (A) <1 (-) 0 (-) >0.05
rs16832011 chr2:136545299 LCT [-111bp] C - 13 A vs. G - 0.058 (G) >1 (-) 0 (-) >0.05
rs56229434 chr2:136605832 MCM6 C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs143695328 chr2:136543937 UBXN4 [+1312bp] C - 5 T vs. C - - <1 (-) 25 (-) >0.05
rs4988147 chr2:136631838 MCM6 C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs60558655 chr2:136510302 UBXN4 C - 12 A vs. C 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs80116247 chr2:136554477 LCT C - 8 T vs. C 0.017 (C) - >1 (-) 0 (-) >0.05
rs3213891 chr2:136552371 LCT C - 8 A vs. G 0.025 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs115004796 chr2:136509567 UBXN4 C - 10 A vs. G 0.008 (G) - <1 (-) 49 (-) >0.05
rs140159427 chr2:136604166 MCM6 C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs116350292 chr2:136499236 UBXN4 C - 8 C vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs74323833 chr2:136596162 MCM6 [-1034bp] C - 13 A vs. G - 0.042 (A) <1 (-) 0 (-) >0.05
rs78859047 chr2:136553741 LCT C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs60940257 chr2:136533195 UBXN4 C - 13 A vs. G 0.017 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs111776598 chr2:136516473 UBXN4 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs59757866 chr2:136553323 LCT C - 13 A vs. T - 0.058 (A) <1 (-) 0 (-) >0.05
rs114537394 chr2:136523979 UBXN4 C - 9 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs146919157 chr2:136503713 UBXN4 C - 3 A vs. G - - >1 (-) 48 (-) >0.05
rs16832006 chr2:136543147 UBXN4 [+522bp] C - 13 A vs. G 0.017 (A) 0.125 (A) <1 (-) 0 (-) >0.05
rs58968019 chr2:136530248 UBXN4 C - 13 A vs. G 0.017 (A) 0.133 (A) <1 (-) 0 (-) >0.05
rs6710808 chr2:136516308 UBXN4 C - 12 A vs. T 0.008 (T) 0.117 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]