LCT, chr2:136545410-136594750 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4988235 chr2:136608646 MCM6 All: C 108,544 14 G vs. A 0.225 (G) - 0.89 (0.86-0.93) 0 (0-49) 7.41e-09
Meta_image?name=rs4988235

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs16832000 chr2:136531252 UBXN4 C - 12 A vs. C 0.017 (A) 0.125 (A) <1 (-) 0 (-) >0.05
rs79399285 chr2:136549824 LCT C - 10 C vs. G - - <1 (-) 0 (-) >0.05
rs72972138 chr2:136571822 LCT C - 13 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs60374504 chr2:136569336 LCT C - 13 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs16831997 chr2:136511874 UBXN4 C - 12 T vs. C 0.017 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs11903047 chr2:136573394 LCT C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs59578702 chr2:136514709 UBXN4 C - 12 T vs. G 0.017 (T) 0.125 (T) <1 (-) 0 (-) >0.05
rs11884924 chr2:136575887 LCT C - 13 A vs. C - 0.058 (A) <1 (-) 0 (-) >0.05
rs112347136 chr2:136576363 LCT C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs59506451 chr2:136574463 LCT C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs35093754 chr2:136574968 LCT C - 13 C vs. G - 0.058 (C) <1 (-) 0 (-) >0.05
rs4988275 chr2:136599520 MCM6 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs72972152 chr2:136582725 LCT C - 13 T vs. G - 0.083 (T) <1 (-) 0 (-) >0.05
rs62170080 chr2:136521595 UBXN4 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs57130884 chr2:136530556 UBXN4 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs3816088 chr2:136587238 LCT C - 13 C vs. G - 0.058 (C) <1 (-) 0 (-) >0.05
rs113028896 chr2:136586632 LCT C - 13 T vs. G - 0.067 (T) <1 (-) 0 (-) >0.05
rs138102338 chr2:136631443 MCM6 C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs150486299 chr2:136498218 UBXN4 [-971bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs112994360 chr2:136586721 LCT C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs143078127 chr2:136509470 UBXN4 C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs4988141 chr2:136634167 MCM6 [+171bp] C - 12 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs77631953 chr2:136545465 LCT C - 11 T vs. G - - >1 (-) 0 (-) >0.05
rs114231191 chr2:136544108 LCT [-1302bp] C - 11 A vs. T 0.008 (A) - <1 (-) 0 (-) >0.05
rs77433997 chr2:136496845 UBXN4 [-2344bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs138972947 chr2:136533368 UBXN4 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs55897793 chr2:136523045 UBXN4 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs16832067 chr2:136584879 LCT C - 13 A vs. G - 0.058 (G) >1 (-) 0 (-) >0.05
rs150279834 chr2:136545170 LCT [-240bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs3820791 chr2:136581685 LCT C - 13 C vs. G - 0.058 (C) <1 (-) 0 (-) >0.05
rs62158999 chr2:136573629 LCT C - 12 A vs. G 0.008 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs3087350 chr2:136598316 MCM6 C - 13 T vs. C - 0.05 (T) <1 (-) 0 (-) >0.05
rs72972156 chr2:136586058 LCT C - 13 A vs. G - 0.058 (A) <1 (-) 0 (-) >0.05
rs56179960 chr2:136605142 MCM6 C - 13 T vs. C - 0.025 (C) <1 (-) 0 (-) >0.05
rs60946352 chr2:136601167 MCM6 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs72972158 chr2:136586410 LCT C - 13 A vs. G - 0.2 (A) <1 (-) 0 (-) >0.05
rs62170085 chr2:136545569 LCT C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs117529441 chr2:136604699 MCM6 C - 13 T vs. C - 0.05 (C) >1 (-) 0 (-) >0.05
rs4988256 chr2:136605402 MCM6 C - 13 A vs. T - 0.025 (T) >1 (-) 0 (-) >0.05
rs4988185 chr2:136621941 MCM6 C - 13 T vs. C - 0.058 (T) <1 (-) 0 (-) >0.05
rs62168848 chr2:136497347 UBXN4 [-1842bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs143029284 chr2:136624897 MCM6 C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs4988186 chr2:136621858 MCM6 C - 13 T vs. G - 0.058 (T) <1 (-) 0 (-) >0.05
rs2304369 chr2:136609320 MCM6 C - 13 A vs. G - 0.058 (A) <1 (-) 0 (-) >0.05
rs4988232 chr2:136609671 MCM6 C - 13 A vs. G - 0.058 (A) <1 (-) 0 (-) >0.05
rs72972179 chr2:136611400 MCM6 C - 13 A vs. G - 0.067 (A) <1 (-) 0 (-) >0.05
rs4988191 chr2:136619744 MCM6 C - 13 A vs. C - 0.067 (C) >1 (-) 0 (-) >0.05
rs142761194 chr2:136626115 MCM6 C - 3 C vs. G - - <1 (-) 0 (-) >0.05
rs62170084 chr2:136537911 UBXN4 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs4988189 chr2:136620957 MCM6 C - 13 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]