PDPN, chr1:13909960-13944452 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs77767280 chr1:13890612 PDPN [-19348bp] C - 3 A vs. T - 0.125 (T) >1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs77150195 chr1:13971087 RNA5SP41 [+21308bp] C - 13 C vs. G 0.083 (C) 0.05 (C) >1 (-) 0 (-) >0.05
rs75482983 chr1:13970756 RNA5SP41 [+20977bp] C - 13 A vs. G 0.075 (A) - >1 (-) 0 (-) >0.05
rs372349 chr1:13935667 PDPN C - 13 T vs. C 0.317 (T) 0.383 (T) <1 (-) 1 (-) >0.05
rs113891854 chr1:13970606 RNA5SP41 [+20827bp] C - 13 T vs. C 0.083 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs75274212 chr1:13970642 RNA5SP41 [+20863bp] C - 13 T vs. C 0.083 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs79152746 chr1:13970569 RNA5SP41 [+20790bp] C - 13 T vs. C 0.083 (T) - >1 (-) 0 (-) >0.05
rs114090425 chr1:13970880 RNA5SP41 [+21101bp] C - 13 T vs. C 0.083 (T) - >1 (-) 0 (-) >0.05
rs4662001 chr1:13968326 RNA5SP41 [+18547bp] C - 13 T vs. C 0.083 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs12063700 chr1:13972211 RNA5SP41 [+22432bp] C - 13 A vs. G 0.083 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs12063888 chr1:13972614 RNA5SP41 [+22835bp] C - 13 A vs. G 0.083 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs28500532 chr1:13971448 RNA5SP41 [+21669bp] C - 13 A vs. G 0.075 (A) - >1 (-) 0 (-) >0.05
rs6672467 chr1:13878548 PDPN [-31412bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs11799368 chr1:13973169 RNA5SP41 [+23390bp] C - 13 A vs. G 0.083 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs4434832 chr1:13972905 RNA5SP41 [+23126bp] C - 13 A vs. G 0.083 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs12063638 chr1:13972072 RNA5SP41 [+22293bp] C - 13 A vs. G 0.083 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs28408770 chr1:13971728 RNA5SP41 [+21949bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs4279845 chr1:13972919 RNA5SP41 [+23140bp] C - 13 A vs. G 0.092 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs10927914 chr1:13957014 RNA5SP41 [+7235bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs11802383 chr1:13976988 RNA5SP41 [+27209bp] C - 13 A vs. C 0.083 (A) - >1 (-) 0 (-) >0.05
rs141298396 chr1:13928075 PDPN C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs4661998 chr1:13967844 RNA5SP41 [+18065bp] C - 13 T vs. G 0.083 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs6659186 chr1:13967218 RNA5SP41 [+17439bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs4661999 chr1:13967854 RNA5SP41 [+18075bp] C - 13 T vs. C 0.083 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs79717899 chr1:13970908 RNA5SP41 [+21129bp] C - 13 A vs. G 0.083 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs10927917 chr1:13963269 RNA5SP41 [+13490bp] C - 13 A vs. G - - >1 (-) 5 (-) >0.05
rs61347141 chr1:13880696 PDPN [-29264bp] C - 13 A vs. G - - >1 (-) 18 (-) >0.05
rs28429663 chr1:13971410 RNA5SP41 [+21631bp] C - 13 A vs. G 0.083 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs28698581 chr1:13971411 RNA5SP41 [+21632bp] C - 13 T vs. C 0.083 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs4661955 chr1:13960863 RNA5SP41 [+11084bp] C - 13 C vs. G 0.083 (C) - >1 (-) 0 (-) >0.05
rs149936582 chr1:13958769 RNA5SP41 [+8990bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs6696321 chr1:13965940 RNA5SP41 [+16161bp] C - 13 T vs. C 0.083 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs3897424 chr1:13965618 RNA5SP41 [+15839bp] C - 13 A vs. C 0.067 (C) - <1 (-) 0 (-) >0.05
rs76122039 chr1:13965975 RNA5SP41 [+16196bp] C - 13 T vs. C 0.083 (C) - <1 (-) 0 (-) >0.05
rs6701027 chr1:13965854 RNA5SP41 [+16075bp] C - 13 A vs. G 0.083 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs10927926 chr1:13966218 RNA5SP41 [+16439bp] C - 13 A vs. G 0.083 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs3897425 chr1:13965364 RNA5SP41 [+15585bp] C - 13 A vs. G 0.083 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs74056410 chr1:13965882 RNA5SP41 [+16103bp] C - 13 A vs. G 0.083 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs74056409 chr1:13965731 RNA5SP41 [+15952bp] C - 13 T vs. C 0.083 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs4661416 chr1:13963862 RNA5SP41 [+14083bp] C - 13 T vs. C 0.092 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs77546979 chr1:13990541 PRDM2 [-36152bp] C - 13 A vs. G 0.075 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs79013617 chr1:13970997 RNA5SP41 [+21218bp] C - 13 A vs. G 0.083 (G) - <1 (-) 0 (-) >0.05
rs79904470 chr1:13971010 RNA5SP41 [+21231bp] C - 13 A vs. T 0.083 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs10927925 chr1:13966165 RNA5SP41 [+16386bp] C - 13 T vs. C 0.083 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs4661954 chr1:13960764 RNA5SP41 [+10985bp] C - 13 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
rs6682123 chr1:13883883 PDPN [-26077bp] C - 13 T vs. C - - >1 (-) 17 (-) >0.05
rs78563435 chr1:13970950 RNA5SP41 [+21171bp] C - 13 T vs. G 0.083 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs76636933 chr1:13960500 RNA5SP41 [+10721bp] C - 13 T vs. G 0.083 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs78675661 chr1:13963864 RNA5SP41 [+14085bp] C - 13 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs141809012 chr1:13967106 RNA5SP41 [+17327bp] C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs77598311 chr1:13964665 RNA5SP41 [+14886bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.