POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6936604 chr6:31174926 HCG27 [+3181bp] All: C 103,235 14 C vs. T 0.275 (C) 0.317 (C) 0.94 (0.91-0.97) 3 (0-56) 1.47e-04
rs3130931 chr6:31134888 TCF19 All: C 97,715 13 T vs. C 0.333 (T) 0.392 (T) 1.07 (1.03-1.11) 0 (0-31) 1.68e-04
rs9263875 chr6:31170914 HCG27 All: C 103,235 14 G vs. A 0.4 (G) 0.425 (G) 0.94 (0.91-0.97) 0 (0-53) 1.78e-04
rs9391712 chr6:31166719 HCG27 All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 27 (0-61) 1.84e-04
rs28360063 chr6:31160298 HCG27 [-5239bp] All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.92 (0.89-0.96) 26 (0-61) 1.92e-04
rs28360061 chr6:31160131 HCG27 [-5406bp] All: C 103,235 14 A vs. G 0.175 (A) 0.367 (A) 0.92 (0.89-0.96) 26 (0-61) 1.93e-04
rs28360060 chr6:31159533 HCG27 [-6004bp] All: C 103,235 14 C vs. T - - 1.09 (1.04-1.13) 25 (0-60) 1.96e-04
rs7755702 chr6:31158373 HCG27 [-7164bp] All: C 103,235 14 G vs. A - 0.367 (A) 1.08 (1.04-1.13) 26 (0-61) 1.96e-04
rs9391818 chr6:31157738 HCG27 [-7799bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.13) 26 (0-61) 1.98e-04
rs9405052 chr6:31157709 HCG27 [-7828bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 26 (0-61) 1.98e-04
rs9378115 chr6:31156465 POU5F1 [+7957bp] All: C 103,235 14 T vs. C 0.175 (T) 0.367 (T) 0.92 (0.89-0.96) 26 (0-61) 2.04e-04
rs9357115 chr6:31155991 POU5F1 [+7483bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 26 (0-61) 2.06e-04
rs28360056 chr6:31155434 POU5F1 [+6926bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 25 (0-60) 2.25e-04
rs4713442 chr6:31155405 POU5F1 [+6897bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 25 (0-60) 2.25e-04
rs28397286 chr6:31167573 HCG27 All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.92 (0.89-0.96) 25 (0-60) 2.28e-04
rs6899875 chr6:31154897 POU5F1 [+6389bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 25 (0-60) 2.30e-04
rs10807081 chr6:31169764 HCG27 C - 12 T vs. G 0.075 (T) 0.258 (T) <1 (-) 37 (-) <0.05
rs34837204 chr6:31188436 HCG27 [+16691bp] All: C 103,235 14 C vs. T - - 1.11 (1.05-1.18) 37 (0-66) 2.45e-04
rs28397285 chr6:31167347 HCG27 All: C 103,235 14 A vs. G 0.2 (A) 0.392 (A) 0.93 (0.90-0.97) 26 (0-61) 2.48e-04
rs28360062 chr6:31160218 HCG27 [-5319bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 26 (0-61) 2.52e-04
rs28397270 chr6:31164635 HCG27 [-902bp] All: C 103,235 14 C vs. T 0.2 (C) 0.383 (C) 0.93 (0.89-0.97) 21 (0-58) 2.53e-04
rs34467061 chr6:31169575 HCG27 All: C 103,235 14 G vs. A - - 1.08 (1.04-1.12) 17 (0-55) 2.74e-04
rs28397271 chr6:31164643 HCG27 [-894bp] All: C 103,235 14 T vs. C 0.2 (T) 0.383 (T) 0.93 (0.89-0.97) 21 (0-58) 2.93e-04
rs6922553 chr6:31164242 HCG27 [-1295bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 17 (0-55) 2.94e-04
rs6922842 chr6:31164236 HCG27 [-1301bp] All: C 103,235 14 G vs. A - - 1.09 (1.04-1.14) 12 (0-50) 3.02e-04
rs28397269 chr6:31164595 HCG27 [-942bp] All: C 103,235 14 A vs. G 0.175 (A) 0.225 (A) 0.92 (0.88-0.96) 34 (0-65) 3.07e-04
rs3094194 chr6:31136240 POU5F1 All: C 103,235 14 A vs. G - - 0.94 (0.91-0.97) 30 (0-63) 3.13e-04
rs28360066 chr6:31164517 HCG27 [-1020bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 14 (0-52) 3.14e-04
rs6922994 chr6:31164271 HCG27 [-1266bp] All: C 103,235 14 A vs. G 0.208 (A) 0.392 (A) 0.93 (0.90-0.97) 21 (0-58) 3.29e-04
rs6927253 chr6:31164472 HCG27 [-1065bp] All: C 103,235 14 C vs. A - - 1.07 (1.03-1.11) 21 (0-58) 3.33e-04
rs28397268 chr6:31164590 HCG27 [-947bp] All: C 103,235 14 C vs. A 0.2 (C) - 0.93 (0.90-0.97) 23 (0-59) 3.37e-04
rs6913015 chr6:31174655 HCG27 [+2910bp] All: C 103,235 14 A vs. G - - 1.10 (1.04-1.16) 13 (0-51) 3.38e-04
rs28360065 chr6:31164507 HCG27 [-1030bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 14 (0-52) 3.75e-04
rs9295960 chr6:31163566 HCG27 [-1971bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.13) 13 (0-51) 3.75e-04
rs9391819 chr6:31163569 HCG27 [-1968bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.13) 13 (0-51) 3.75e-04
rs28397288 chr6:31197143 HCG27 [+25398bp] All: C 103,235 14 C vs. A 0.358 (C) 0.308 (C) 0.94 (0.91-0.97) 3 (0-57) 3.83e-04
rs6922756 chr6:31164410 HCG27 [-1127bp] All: C 103,235 14 G vs. A 0.2 (G) 0.4 (G) 0.93 (0.90-0.97) 22 (0-59) 3.84e-04
rs3094188 chr6:31142245 POU5F1 All: C 103,235 14 C vs. A 0.358 (C) 0.292 (C) 1.06 (1.03-1.10) 15 (0-53) 3.94e-04
rs9366769 chr6:31169289 HCG27 All: C 103,235 14 C vs. T 0.2 (C) 0.392 (C) 0.93 (0.90-0.97) 18 (0-56) 4.01e-04
rs28360064 chr6:31162384 HCG27 [-3153bp] All: C 103,235 14 A vs. G 0.2 (A) 0.392 (A) 0.94 (0.90-0.97) 19 (0-56) 4.12e-04
rs6899874 chr6:31162328 HCG27 [-3209bp] All: C 103,235 14 A vs. C 0.2 (A) 0.392 (A) 0.94 (0.90-0.97) 19 (0-56) 4.12e-04
rs3094607 chr6:31169539 HCG27 All: C 103,235 14 G vs. A - - 0.92 (0.88-0.97) 20 (0-57) 4.15e-04
rs9380223 chr6:31168588 HCG27 All: C 103,235 14 G vs. A - - 1.07 (1.03-1.11) 19 (0-56) 4.23e-04
rs4122189 chr6:31167927 HCG27 All: C 103,235 14 T vs. C 0.2 (T) 0.392 (T) 0.94 (0.90-0.97) 20 (0-57) 4.24e-04
rs28397282 chr6:31165846 HCG27 All: C 103,235 14 T vs. C 0.208 (T) 0.392 (T) 0.94 (0.90-0.97) 20 (0-57) 4.27e-04
rs9380222 chr6:31167213 HCG27 All: C 103,235 14 C vs. T - - 1.07 (1.03-1.11) 20 (0-57) 4.30e-04
rs9394042 chr6:31167011 HCG27 All: C 103,235 14 G vs. A - - 1.07 (1.03-1.11) 20 (0-57) 4.30e-04
rs6901685 chr6:31163796 HCG27 [-1741bp] All: C 103,235 14 C vs. T 0.183 (C) 0.392 (C) 0.93 (0.90-0.97) 18 (0-56) 4.39e-04
rs9404983 chr6:31166828 HCG27 All: C 103,235 14 T vs. C 0.2 (T) 0.392 (T) 0.93 (0.90-0.97) 23 (0-59) 4.53e-04
rs3094226 chr6:31112899 CCHCR1 All: C 103,235 14 C vs. T 0.275 (C) 0.342 (C) 1.07 (1.03-1.11) 0 (0-1) 4.62e-04

Association studies for this region [+]