PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6051561 chr20:3043704 OXT [-8562bp] C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs78458087 chr20:2971574 PTPRA C - 4 T vs. G 0.008 (G) 0.183 (G) <1 (-) 0 (-) >0.05
rs2274669 chr20:2816821 PCED1A C - 13 T vs. C 0.242 (T) 0.267 (T) <1 (-) 0 (-) >0.05
rs7508908 chr20:2975631 PTPRA C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs73084679 chr20:2877240 PTPRA C - 13 A vs. G 0.158 (G) 0.242 (G) >1 (-) 0 (-) >0.05
rs73088761 chr20:3061431 AVP [-1771bp] C - 10 A vs. C 0.142 (C) 0.158 (C) >1 (-) 0 (-) >0.05
rs2740193 chr20:3059372 AVP [-3830bp] C - 10 T vs. C 0.3 (C) 0.292 (C) >1 (-) 15 (-) >0.05
rs2740201 chr20:3056686 OXT [+3523bp] C - 12 A vs. G 0.283 (A) 0.333 (A) <1 (-) 0 (-) >0.05
rs34653198 chr20:2845039 VPS16 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs2740194 chr20:3059364 AVP [-3838bp] C - 10 T vs. C 0.3 (C) 0.292 (C) >1 (-) 15 (-) >0.05
rs73072905 chr20:3061508 AVP [-1694bp] C - 10 A vs. T 0.133 (T) 0.158 (T) >1 (-) 0 (-) >0.05
rs73086661 chr20:2943541 PTPRA C - 13 A vs. G 0.183 (G) 0.267 (G) >1 (-) 0 (-) >0.05
rs28718735 chr20:2915416 PTPRA C - 5 C vs. G - - >1 (-) 0 (-) >0.05
rs9798512 chr20:3047635 OXT [-4631bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs58220726 chr20:2880852 PTPRA C - 13 T vs. G 0.167 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs2740204 chr20:3062467 AVP [-735bp] C - 12 T vs. G 0.317 (T) 0.442 (T) <1 (-) 0 (-) >0.05
rs3761244 chr20:3023181 GNRH2 [-1087bp] C - 13 A vs. G 0.175 (G) 0.333 (G) >1 (-) 21 (-) >0.05
rs147120947 chr20:2817286 PCED1A C - 10 T vs. C - - >1 (-) 0 (-) >0.05
rs1410713 chr20:3060350 AVP [-2852bp] C - 10 A vs. C 0.317 (A) 0.258 (A) <1 (-) 12 (-) >0.05
rs111869749 chr20:3052586 OXT C - 10 A vs. G 0.05 (G) - >1 (-) 0 (-) >0.05
rs147717647 chr20:2994673 PTPRA C - 9 T vs. C - - <1 (-) 19 (-) >0.05
rs114370317 chr20:3020336 PTPRA [+614bp] C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs2740197 chr20:3057258 OXT [+4095bp] C - 12 A vs. G 0.292 (A) 0.333 (A) <1 (-) 0 (-) >0.05
rs145680283 chr20:2981137 PTPRA C - 9 T vs. C - - >1 (-) 20 (-) >0.05
rs117720237 chr20:2855101 PTPRA C - 3 T vs. C 0.017 (T) - >1 (-) 72 (-) >0.05
rs6037463 chr20:3032272 MRPS26 [+3372bp] C - 13 T vs. C 0.375 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs3761243 chr20:3023022 GNRH2 [-1246bp] C - 13 A vs. C 0.283 (C) 0.367 (C) >1 (-) 32 (-) >0.05
rs12480089 chr20:3018279 PTPRA C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs679790 chr20:2865645 PTPRA C - 13 T vs. C - - >1 (-) 16 (-) >0.05
rs138735410 chr20:2875494 PTPRA C - 4 C vs. G - - >1 (-) 0 (-) >0.05
rs6138990 chr20:3022618 GNRH2 [-1650bp] C - 13 T vs. C 0.175 (T) 0.333 (T) <1 (-) 24 (-) >0.05
rs116984114 chr20:2941488 PTPRA C - 3 A vs. T - 0.025 (A) >1 (-) 0 (-) >0.05
rs2740203 chr20:3056180 OXT [+3017bp] C - 12 A vs. G 0.292 (A) 0.35 (A) <1 (-) 0 (-) >0.05
rs4813627 chr20:3055513 OXT [+2350bp] C - 12 A vs. G 0.433 (A) 0.417 (A) <1 (-) 0 (-) >0.05
rs7262038 chr20:3013651 PTPRA C - 13 A vs. G 0.117 (G) 0.142 (G) <1 (-) 19 (-) >0.05
rs8124141 chr20:2981604 PTPRA C - 13 A vs. G 0.192 (G) 0.233 (G) >1 (-) 0 (-) >0.05
rs73083209 chr20:2809486 PCED1A [-6474bp] C - 13 T vs. G 0.208 (T) 0.242 (T) <1 (-) 0 (-) >0.05
rs497518 chr20:2856178 PTPRA C - 13 A vs. C 0.083 (C) 0.192 (C) <1 (-) 28 (-) >0.05
rs6051545 chr20:3025107 GNRH2 C - 13 T vs. C 0.175 (T) 0.333 (T) <1 (-) 21 (-) >0.05
rs114569608 chr20:2942455 PTPRA C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs144223192 chr20:2853631 PTPRA C - 3 C vs. G - - >1 (-) 0 (-) >0.05
rs55775223 chr20:2881765 PTPRA C - 11 T vs. C 0.033 (T) - <1 (-) 9 (-) >0.05
rs6084189 chr20:2869695 PTPRA C - 13 A vs. G 0.175 (G) 0.242 (G) >1 (-) 0 (-) >0.05
rs75356450 chr20:2998219 PTPRA C - 3 A vs. G - 0.025 (A) >1 (-) 0 (-) >0.05
rs6084180 chr20:2808307 TMEM239 [+7377bp] C - 13 T vs. C 0.208 (C) 0.233 (C) >1 (-) 0 (-) >0.05
rs73086646 chr20:2927003 PTPRA C - 13 A vs. T 0.158 (A) 0.283 (A) >1 (-) 1 (-) >0.05
rs6138991 chr20:3024070 GNRH2 [-198bp] C - 13 A vs. G 0.292 (G) 0.367 (G) >1 (-) 31 (-) >0.05
rs140835740 chr20:3001373 PTPRA C - 3 C vs. G - - >1 (-) 0 (-) >0.05
rs12480786 chr20:3001036 PTPRA C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs6515756 chr20:2995392 PTPRA C - 13 T vs. C 0.175 (T) 0.25 (T) >1 (-) 8 (-) >0.05

Association studies for this region [+]