PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4308171 chr20:2989506 PTPRA C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6084231 chr20:2990206 PTPRA C - 13 T vs. C 0.392 (T) 0.358 (C) <1 (-) 0 (-) >0.05
rs6076452 chr20:2973119 PTPRA C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs16988201 chr20:2992085 PTPRA C - 10 T vs. C 0.017 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs1178031 chr20:2992928 PTPRA C - 13 T vs. G 0.483 (T) 0.183 (G) <1 (-) 18 (-) >0.05
rs6138974 chr20:2962331 PTPRA C - 9 A vs. G 0.017 (A) 0.242 (A) <1 (-) 0 (-) >0.05
rs11696687 chr20:2962917 PTPRA C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs75990124 chr20:2990104 PTPRA C - 9 T vs. G 0.017 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs139852576 chr20:3004099 PTPRA C - 5 A vs. G - - >1 (-) 0 (-) >0.05
rs117000514 chr20:2868074 PTPRA C - 11 A vs. G 0.008 (A) 0.083 (A) <1 (-) 25 (-) >0.05
rs117765690 chr20:2965806 PTPRA C - 8 A vs. T - 0.033 (T) >1 (-) 41 (-) >0.05
rs114796685 chr20:2865983 PTPRA C - 11 T vs. G 0.017 (T) 0.108 (T) <1 (-) 28 (-) >0.05
rs117709906 chr20:2834086 VPS16 C - 10 A vs. G - 0.075 (G) >1 (-) 3 (-) >0.05
rs1555667 chr20:2847384 PTPRA C - 9 T vs. C 0.008 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs78292012 chr20:2902172 PTPRA C - 11 A vs. G 0.017 (G) 0.108 (G) >1 (-) 23 (-) >0.05
rs7262267 chr20:2865976 PTPRA C - 12 A vs. G 0.408 (G) 0.433 (A) >1 (-) 0 (-) >0.05
rs2073127 chr20:2796133 TMEM239 C - 13 A vs. G 0.283 (A) 0.325 (A) <1 (-) 0 (-) >0.05
rs6076466 chr20:3034048 MRPS26 [+5148bp] C - 13 T vs. C 0.233 (C) 0.133 (C) <1 (-) 0 (-) >0.05
rs6037482 chr20:3067428 AVP [+2058bp] C - 12 A vs. C 0.267 (A) 0.083 (A) >1 (-) 0 (-) >0.05
rs2326054 chr20:3033175 MRPS26 [+4275bp] C - 13 T vs. C 0.133 (C) 0.1 (C) >1 (-) 41 (-) >0.05
rs4813623 chr20:2970390 PTPRA C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs2326056 chr20:3037607 MRPS26 [+8707bp] C - 13 A vs. C 0.25 (A) 0.142 (A) >1 (-) 9 (-) >0.05
rs11697448 chr20:3036457 MRPS26 [+7557bp] C - 13 A vs. G 0.25 (A) 0.133 (A) >1 (-) 12 (-) >0.05
rs6051570 chr20:3054649 OXT [+1486bp] C - 12 T vs. C 0.375 (C) 0.408 (C) <1 (-) 0 (-) >0.05
rs34386558 chr20:3050891 OXT [-1375bp] C - 7 A vs. C - - >1 (-) 0 (-) >0.05
rs1555668 chr20:2847377 VPS16 C - 10 T vs. C 0.008 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs4813625 chr20:3049720 OXT [-2546bp] C - 12 C vs. G 0.467 (C) 0.45 (C) >1 (-) 0 (-) >0.05
rs112715178 chr20:2817499 PCED1A C - 9 A vs. G 0.025 (G) - >1 (-) 40 (-) >0.05
rs61729220 chr20:3025330 GNRH2 C - 3 A vs. G - - <1 (-) 70 (-) >0.05
rs112606028 chr20:2903377 PTPRA C - 13 A vs. G - - <1 (-) 3 (-) >0.05
rs11697250 chr20:3048537 OXT [-3729bp] C - 12 A vs. G 0.192 (G) 0.1 (G) >1 (-) 29 (-) >0.05
rs13040512 chr20:3029699 MRPS26 [+799bp] C - 13 A vs. G - - <1 (-) 12 (-) >0.05
rs2094601 chr20:3037160 MRPS26 [+8260bp] C - 10 T vs. C 0.2 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs12151862 chr20:3013354 PTPRA C - 13 A vs. G 0.292 (G) 0.25 (G) >1 (-) 13 (-) >0.05
rs2326055 chr20:3037511 MRPS26 [+8611bp] C - 10 T vs. C 0.2 (C) 0.083 (C) >1 (-) 0 (-) >0.05
rs6037452 chr20:2979141 PTPRA C - 13 C vs. G 0.267 (C) 0.1 (G) <1 (-) 18 (-) >0.05
rs12480076 chr20:3011518 PTPRA C - 5 T vs. G 0.033 (T) - >1 (-) 57 (-) >0.05
rs79127996 chr20:2885482 PTPRA C - 13 A vs. G 0.125 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs6138992 chr20:3024372 GNRH2 C - 9 T vs. C - 0.083 (C) >1 (-) 0 (-) >0.05
rs77729729 chr20:3022464 GNRH2 [-1804bp] C - 9 A vs. G - 0.083 (A) <1 (-) 0 (-) >0.05
rs112543840 chr20:2876099 PTPRA C - 13 C vs. G 0.108 (G) 0.05 (G) >1 (-) 0 (-) >0.05
rs3787482 chr20:3064110 AVP C - 12 A vs. G 0.383 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs215561 chr20:2797015 TMEM239 C - 13 A vs. G 0.408 (G) 0.392 (A) >1 (-) 0 (-) >0.05
rs6084258 chr20:3048495 OXT [-3771bp] C - 12 A vs. G 0.308 (A) 0.233 (A) >1 (-) 0 (-) >0.05
rs77555429 chr20:3051624 OXT [-642bp] C - 8 T vs. C 0.1 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs3761249 chr20:3066362 AVP [+992bp] C - 5 T vs. G 0.108 (G) 0.292 (G) >1 (-) 0 (-) >0.05
rs144082946 chr20:2988247 PTPRA C - 3 A vs. G - - <1 (-) 4 (-) >0.05
rs913554 chr20:3050566 OXT [-1700bp] C - 12 A vs. G - - <1 (-) 33 (-) >0.05
rs146720554 chr20:2831182 VPS16 C - 13 A vs. G - - >1 (-) 22 (-) >0.05
rs6138903 chr20:2813650 PCED1A [-2310bp] C - 8 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]