SCN2A, chr2:166095912-166248818 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs353116 chr2:166133632 SCN2A All: C 108,990 15 T vs. C 0.358 (T) 0.242 (C) 0.93 (0.90-0.97) 0 (0-43) 3.91e-05
Meta_image?name=rs353116

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs353116 chr2:166133632 SCN2A All: C 108,990 15 T vs. C 0.358 (T) 0.242 (C) 0.93 (0.90-0.97) 0 (0-43) 3.91e-05
rs353128 chr2:166138608 SCN2A All: C 108,990 15 G vs. A 0.35 (G) 0.25 (A) 0.94 (0.91-0.97) 0 (0-50) 1.28e-04
rs16850311 chr2:166139982 SCN2A C - 13 C vs. G 0.3 (G) 0.158 (G) <1 (-) 0 (-) <0.05
rs6740895 chr2:166140020 SCN2A C - 13 T vs. C 0.3 (C) 0.158 (C) <1 (-) 0 (-) <0.05
rs72872471 chr2:166139787 SCN2A C - 13 T vs. C 0.3 (T) 0.158 (T) >1 (-) 0 (-) <0.05
rs7561826 chr2:166136558 SCN2A C - 13 T vs. G 0.308 (T) 0.1 (T) >1 (-) 0 (-) <0.05
rs72872449 chr2:166127513 SCN2A C - 13 C vs. G 0.225 (G) 0.092 (G) <1 (-) 0 (-) <0.05
rs7607078 chr2:166125339 SCN2A C - 13 A vs. T 0.342 (A) 0.067 (A) >1 (-) 0 (-) <0.05
rs353123 chr2:166128838 SCN2A C - 13 A vs. G 0.225 (A) 0.083 (A) >1 (-) 0 (-) <0.05
rs11894137 chr2:166120271 SCN2A C - 7 T vs. G - - >1 (-) 0 (-) <0.05
rs148153817 chr2:166077246 SCN3A [+16669bp] C - 4 C vs. G - - >1 (-) 38 (-) <0.05
rs72872458 chr2:166129453 SCN2A C - 13 A vs. T 0.225 (A) 0.05 (A) >1 (-) 0 (-) <0.05
rs353139 chr2:166146227 SCN2A C - 13 T vs. C 0.392 (C) 0.333 (T) >1 (-) 0 (-) <0.05
rs6432817 chr2:166159099 SCN2A C - 13 A vs. G 0.392 (A) 0.192 (G) <1 (-) 0 (-) <0.05
rs7581811 chr2:166157165 SCN2A C - 13 C vs. G 0.392 (C) 0.192 (G) <1 (-) 0 (-) <0.05
rs7607897 chr2:166156941 SCN2A C - 13 A vs. G 0.392 (A) 0.192 (G) <1 (-) 0 (-) <0.05
rs7598931 chr2:166163660 SCN2A C - 13 A vs. T 0.383 (T) 0.175 (A) >1 (-) 0 (-) <0.05
rs997508 chr2:166166456 SCN2A C - 13 T vs. C 0.392 (C) 0.175 (T) >1 (-) 0 (-) <0.05
rs73021868 chr2:166073491 SCN3A [+12914bp] C - 13 A vs. G 0.1 (A) - >1 (-) 0 (-) <0.05
rs1465683 chr2:166163190 SCN2A C - 13 A vs. T 0.408 (A) 0.2 (T) <1 (-) 0 (-) <0.05
rs72872477 chr2:166141756 SCN2A C - 13 C vs. G 0.267 (C) 0.133 (C) >1 (-) 0 (-) <0.05
rs1838848 chr2:166144638 SCN2A C - 13 A vs. C 0.392 (C) 0.15 (A) >1 (-) 10 (-) <0.05
rs1371466 chr2:166148647 SCN2A C - 12 T vs. C 0.392 (C) 0.183 (T) >1 (-) 0 (-) <0.05
rs10182570 chr2:166109634 SCN2A C - 13 A vs. C 0.317 (C) 0.5 (C) >1 (-) 28 (-) <0.05
rs10192208 chr2:166118150 SCN2A C - 13 A vs. G 0.317 (G) 0.5 (G) >1 (-) 21 (-) <0.05
rs12692764 chr2:166177972 SCN2A C - 13 C vs. G 0.408 (G) - >1 (-) 0 (-) <0.05
rs11674103 chr2:166177380 SCN2A C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs4667801 chr2:166119767 SCN2A C - 13 C vs. G 0.317 (G) 0.5 (G) >1 (-) 20 (-) <0.05
rs4667802 chr2:166120049 SCN2A C - 13 A vs. G 0.317 (A) 0.5 (A) <1 (-) 20 (-) <0.05
rs2390164 chr2:166112580 SCN2A C - 13 A vs. G - - <1 (-) 25 (-) <0.05
rs7594199 chr2:166120259 SCN2A C - 13 A vs. G 0.317 (A) 0.5 (A) <1 (-) 20 (-) <0.05
rs6704657 chr2:166175311 SCN2A C - 13 T vs. C 0.408 (C) 0.258 (T) >1 (-) 0 (-) <0.05
rs12692763 chr2:166176778 SCN2A C - 13 T vs. C 0.408 (T) 0.275 (C) <1 (-) 0 (-) <0.05
rs7589211 chr2:166124067 SCN2A C - 13 A vs. G 0.317 (A) 0.5 (A) <1 (-) 23 (-) <0.05
rs4667804 chr2:166121586 SCN2A C - 13 T vs. C 0.317 (T) 0.483 (T) <1 (-) 21 (-) <0.05
rs10930154 chr2:166122073 SCN2A C - 13 A vs. G 0.308 (A) - <1 (-) 21 (-) <0.05
rs12993173 chr2:166183214 SCN2A C - 13 T vs. G 0.408 (G) 0.275 (T) >1 (-) 0 (-) <0.05
rs4667803 chr2:166121339 SCN2A C - 13 T vs. C 0.317 (C) 0.45 (T) >1 (-) 20 (-) <0.05
rs142199334 chr2:166273925 SCN2A [+25107bp] C - 8 T vs. G - - <1 (-) 24 (-) <0.05
rs12464379 chr2:166122793 SCN2A C - 13 A vs. C 0.317 (A) 0.5 (A) <1 (-) 20 (-) <0.05
rs10197716 chr2:166124974 SCN2A C - 13 A vs. G 0.317 (G) 0.45 (A) >1 (-) 23 (-) <0.05
rs6432816 chr2:166121808 SCN2A C - 13 C vs. G 0.308 (C) 0.5 (C) <1 (-) 19 (-) <0.05
rs16850290 chr2:166111969 SCN2A C - 13 A vs. G 0.317 (A) 0.475 (A) <1 (-) 24 (-) <0.05
rs1867864 chr2:166179650 SCN2A C - 13 T vs. C 0.408 (C) 0.275 (T) >1 (-) 0 (-) <0.05
rs10174245 chr2:166125081 SCN2A C - 13 T vs. C 0.317 (T) 0.433 (C) <1 (-) 23 (-) <0.05
rs4667800 chr2:166110666 SCN2A C - 13 T vs. G 0.317 (G) 0.5 (G) >1 (-) 24 (-) <0.05
rs10174400 chr2:166125219 SCN2A C - 13 T vs. C 0.317 (T) 0.442 (C) <1 (-) 23 (-) <0.05
rs9973937 chr2:166115900 SCN2A C - 13 T vs. C 0.317 (T) 0.433 (C) <1 (-) 19 (-) <0.05
rs10930155 chr2:166122383 SCN2A C - 13 A vs. G 0.317 (A) 0.5 (A) <1 (-) 20 (-) <0.05
rs10930156 chr2:166122385 SCN2A C - 13 A vs. C 0.317 (A) 0.433 (C) <1 (-) 20 (-) <0.05

Association studies for this region [+]