SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28451553 chr1:53566571 SLC1A7 C - 13 A vs. G 0.25 (G) 0.242 (G) <1 (-) 0 (-) >0.05
rs11804391 chr1:53548606 PODN C - 13 A vs. G 0.217 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs1317433 chr1:53575012 SLC1A7 C - 13 T vs. G 0.225 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs61770798 chr1:53565946 SLC1A7 C - 13 T vs. C 0.25 (C) 0.233 (C) <1 (-) 0 (-) >0.05
rs10465823 chr1:53564637 SLC1A7 C - 13 A vs. G 0.242 (G) 0.242 (G) <1 (-) 0 (-) >0.05
rs2282339 chr1:53550543 PODN C - 13 A vs. G 0.058 (G) 0.183 (G) >1 (-) 15 (-) >0.05
rs10465824 chr1:53564656 SLC1A7 C - 13 A vs. G 0.242 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs1001512 chr1:53549039 PODN C - 13 A vs. G 0.058 (A) 0.183 (A) <1 (-) 14 (-) >0.05
rs1001511 chr1:53549041 PODN C - 13 A vs. G 0.058 (A) 0.183 (A) <1 (-) 14 (-) >0.05
rs10465822 chr1:53564605 SLC1A7 C - 13 T vs. C 0.25 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs12028726 chr1:53551703 PODN [+529bp] C - 13 A vs. G 0.058 (A) 0.192 (A) <1 (-) 21 (-) >0.05
rs34163250 chr1:53549671 PODN C - 13 T vs. C 0.217 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs11206097 chr1:53568101 SLC1A7 C - 13 A vs. G 0.25 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs1288392 chr1:53545744 PODN C - 13 A vs. G 0.058 (A) 0.183 (A) <1 (-) 23 (-) >0.05
rs7524881 chr1:53542077 PODN C - 13 T vs. C 0.225 (C) 0.242 (C) <1 (-) 0 (-) >0.05
rs11581058 chr1:53553522 SLC1A7 C - 13 A vs. G 0.217 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs946590 chr1:53543112 PODN C - 13 C vs. G 0.058 (C) 0.192 (C) <1 (-) 23 (-) >0.05
rs12070099 chr1:53549055 PODN C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs11579966 chr1:53551619 PODN [+445bp] C - 13 A vs. G 0.217 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs6588462 chr1:53551940 PODN [+766bp] C - 13 T vs. G 0.217 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs1295456 chr1:53560428 SLC1A7 C - 13 T vs. C 0.258 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs899972 chr1:53542793 PODN C - 13 T vs. G 0.058 (T) 0.158 (T) <1 (-) 23 (-) >0.05
rs11583585 chr1:53554406 SLC1A7 C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs12042673 chr1:53551880 PODN [+706bp] C - 13 T vs. C 0.058 (T) 0.225 (T) <1 (-) 26 (-) >0.05
rs1288405 chr1:53557612 SLC1A7 C - 13 A vs. C 0.225 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs899974 chr1:53550187 PODN C - 13 T vs. C 0.058 (C) 0.217 (C) >1 (-) 18 (-) >0.05
rs35213028 chr1:53563783 SLC1A7 C - 13 T vs. C 0.208 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs11206091 chr1:53559310 SLC1A7 C - 13 T vs. C 0.233 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs12725485 chr1:53564146 SLC1A7 C - 13 A vs. G 0.217 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs1679937 chr1:53595255 SLC1A7 C - 13 T vs. G 0.333 (G) 0.083 (G) <1 (-) 8 (-) >0.05
rs1679962 chr1:53594191 SLC1A7 C - 13 A vs. G 0.35 (G) 0.108 (G) <1 (-) 10 (-) >0.05
rs6688914 chr1:53597671 SLC1A7 C - 13 A vs. G 0.375 (A) 0.367 (A) >1 (-) 33 (-) >0.05
rs12076660 chr1:53598087 SLC1A7 C - 13 T vs. C 0.375 (T) 0.358 (T) >1 (-) 32 (-) >0.05
rs6688627 chr1:53597390 SLC1A7 C - 13 A vs. G 0.367 (A) 0.375 (A) >1 (-) 33 (-) >0.05
rs1679963 chr1:53593930 SLC1A7 C - 13 T vs. C 0.458 (C) 0.35 (C) <1 (-) 48 (-) >0.05
rs4926962 chr1:53638218 CPT2 [-23883bp] C - 13 T vs. C 0.317 (T) 0.417 (C) <1 (-) 0 (-) >0.05
rs1300169 chr1:53560376 SLC1A7 C - 13 T vs. C 0.217 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs34127376 chr1:53562821 SLC1A7 C - 13 C vs. G 0.158 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs6689888 chr1:53620833 SLC1A7 [+12544bp] C - 13 T vs. C 0.175 (T) 0.258 (T) <1 (-) 0 (-) >0.05
rs12039029 chr1:53623735 SLC1A7 [+15446bp] C - 13 T vs. C 0.175 (C) 0.225 (C) >1 (-) 0 (-) >0.05
rs113652876 chr1:53614388 SLC1A7 [+6099bp] C - 12 A vs. G 0.05 (A) - <1 (-) 39 (-) >0.05
rs35161056 chr1:53572574 SLC1A7 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs6666283 chr1:53586053 SLC1A7 C - 13 C vs. G 0.208 (C) - >1 (-) 41 (-) >0.05
rs12049296 chr1:53623662 SLC1A7 [+15373bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6666580 chr1:53623564 SLC1A7 [+15275bp] C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs3766807 chr1:53595504 SLC1A7 C - 13 A vs. G 0.2 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs113755833 chr1:53657106 CPT2 [-4995bp] C - 6 A vs. G - 0.192 (A) >1 (-) 0 (-) >0.05
rs1288424 chr1:53572058 SLC1A7 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs147220843 chr1:53603727 SLC1A7 C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs10888767 chr1:53598126 SLC1A7 C - 13 T vs. C 0.375 (T) 0.367 (T) >1 (-) 32 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.