SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12097556 chr1:53592963 SLC1A7 C - 13 A vs. G 0.208 (A) 0.325 (A) >1 (-) 36 (-) >0.05
rs75855227 chr1:53613779 SLC1A7 [+5490bp] C - 13 T vs. C 0.167 (T) 0.267 (T) <1 (-) 0 (-) >0.05
rs1288425 chr1:53572065 SLC1A7 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs11206112 chr1:53609535 SLC1A7 [+1246bp] C - 13 A vs. G 0.15 (A) 0.258 (A) <1 (-) 0 (-) >0.05
rs138768897 chr1:53583707 SLC1A7 C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs1288373 chr1:53579402 SLC1A7 C - 12 T vs. C 0.05 (C) 0.35 (T) >1 (-) 10 (-) >0.05
rs12140504 chr1:53558521 SLC1A7 C - 13 T vs. C 0.058 (T) 0.225 (T) <1 (-) 15 (-) >0.05
rs12057760 chr1:53599650 SLC1A7 C - 13 A vs. G 0.392 (A) 0.367 (A) >1 (-) 29 (-) >0.05
rs1288403 chr1:53555783 SLC1A7 C - 13 A vs. C 0.117 (A) 0.317 (C) <1 (-) 0 (-) >0.05
rs6688253 chr1:53639661 CPT2 [-22440bp] C - 13 T vs. C 0.267 (C) 0.425 (T) >1 (-) 0 (-) >0.05
rs7553128 chr1:53611902 SLC1A7 [+3613bp] C - 13 A vs. G 0.15 (A) 0.25 (A) <1 (-) 0 (-) >0.05
rs3125254 chr1:53637740 CPT2 [-24361bp] C - 13 T vs. C 0.267 (T) 0.45 (C) <1 (-) 0 (-) >0.05
rs768771 chr1:53594397 SLC1A7 C - 13 T vs. G 0.242 (T) - >1 (-) 0 (-) >0.05
rs12029288 chr1:53617475 SLC1A7 [+9186bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs3125253 chr1:53637106 CPT2 [-24995bp] C - 13 T vs. C 0.267 (T) 0.45 (C) <1 (-) 0 (-) >0.05
rs4926585 chr1:53572138 SLC1A7 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs12145611 chr1:53538669 PODN C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs56725865 chr1:53600471 SLC1A7 C - 13 T vs. C 0.083 (C) 0.042 (C) <1 (-) 0 (-) >0.05
rs6684231 chr1:53635244 CPT2 [-26857bp] C - 13 A vs. C 0.267 (A) 0.458 (C) <1 (-) 0 (-) >0.05
rs71654985 chr1:53600833 SLC1A7 C - 13 A vs. G 0.058 (A) - >1 (-) 0 (-) >0.05
rs12033100 chr1:53617840 SLC1A7 [+9551bp] C - 13 T vs. C 0.167 (C) 0.258 (C) >1 (-) 0 (-) >0.05
rs4543741 chr1:53636177 CPT2 [-25924bp] C - 13 C vs. G 0.267 (G) 0.458 (C) >1 (-) 0 (-) >0.05
rs4926587 chr1:53594758 SLC1A7 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs3102045 chr1:53646540 CPT2 [-15561bp] C - 13 A vs. T 0.242 (T) 0.442 (A) >1 (-) 0 (-) >0.05
rs3102044 chr1:53646557 CPT2 [-15544bp] C - 13 T vs. C 0.25 (C) 0.442 (T) >1 (-) 0 (-) >0.05
rs2046140 chr1:53632424 SLC1A7 [+24135bp] C - 13 A vs. G 0.167 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs10888775 chr1:53644093 CPT2 [-18008bp] C - 13 A vs. T 0.267 (T) 0.408 (A) >1 (-) 0 (-) >0.05
rs3102046 chr1:53640580 CPT2 [-21521bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs34100876 chr1:53596870 SLC1A7 C - 13 A vs. G 0.075 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs4926957 chr1:53601241 SLC1A7 C - 13 A vs. G 0.233 (G) 0.275 (G) >1 (-) 0 (-) >0.05
rs12130482 chr1:53638694 CPT2 [-23407bp] C - 13 T vs. G 0.292 (G) 0.142 (T) >1 (-) 0 (-) >0.05
rs139857434 chr1:53520981 SCP2 [+3606bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs946593 chr1:53596228 SLC1A7 C - 13 T vs. C 0.283 (C) 0.258 (C) <1 (-) 36 (-) >0.05
rs4244641 chr1:53650094 CPT2 [-12007bp] C - 13 T vs. C 0.25 (C) 0.442 (T) >1 (-) 0 (-) >0.05
rs3125256 chr1:53644535 CPT2 [-17566bp] C - 13 A vs. T 0.258 (A) 0.442 (T) <1 (-) 0 (-) >0.05
rs3102047 chr1:53642449 CPT2 [-19652bp] C - 13 A vs. G 0.242 (A) 0.442 (G) <1 (-) 0 (-) >0.05
rs3125255 chr1:53641358 CPT2 [-20743bp] C - 13 T vs. C 0.25 (T) 0.417 (C) <1 (-) 0 (-) >0.05
rs6663288 chr1:53639748 CPT2 [-22353bp] C - 13 A vs. G 0.283 (G) 0.142 (A) >1 (-) 0 (-) >0.05
rs74529778 chr1:53503274 SCP2 C - 10 T vs. G - 0.067 (G) >1 (-) 40 (-) >0.05
rs3102042 chr1:53643674 CPT2 [-18427bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs3125252 chr1:53636616 CPT2 [-25485bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs3125251 chr1:53635011 SLC1A7 [+26722bp] C - 13 A vs. T 0.25 (A) 0.458 (T) <1 (-) 0 (-) >0.05
rs1288406 chr1:53558270 SLC1A7 C - 12 A vs. G 0.217 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs11590199 chr1:53637636 CPT2 [-24465bp] C - 13 T vs. C 0.275 (C) 0.133 (T) >1 (-) 0 (-) >0.05
rs1288367 chr1:53605884 SLC1A7 C - 13 T vs. C 0.15 (T) 0.267 (T) <1 (-) 0 (-) >0.05
rs1288389 chr1:53544597 PODN C - 13 T vs. C 0.092 (T) 0.292 (C) <1 (-) 0 (-) >0.05
rs116221956 chr1:53513007 SCP2 C - 11 A vs. G 0.025 (G) - >1 (-) 28 (-) >0.05
rs79560803 chr1:53564492 SLC1A7 C - 10 T vs. C 0.033 (T) - >1 (-) 43 (-) >0.05
rs6667002 chr1:53593925 SLC1A7 C - 13 T vs. C 0.233 (C) - <1 (-) 0 (-) >0.05
rs12074944 chr1:53616724 SLC1A7 [+8435bp] C - 13 T vs. G 0.108 (T) - >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.