SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1288334 chr1:53630671 SLC1A7 [+22382bp] C - 13 T vs. C 0.092 (C) 0.042 (C) <1 (-) 0 (-) >0.05
rs150731009 chr1:53654762 CPT2 [-7339bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs3737990 chr1:53608133 SLC1A7 C - 13 A vs. C 0.1 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs12138818 chr1:53581886 SLC1A7 C - 8 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs12744752 chr1:53608711 SLC1A7 [+422bp] C - 13 T vs. C 0.092 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs1288335 chr1:53630531 SLC1A7 [+22242bp] C - 13 A vs. G 0.05 (G) 0.042 (G) <1 (-) 0 (-) >0.05
rs79022991 chr1:53614403 SLC1A7 [+6114bp] C - 13 C vs. G 0.1 (G) 0.042 (G) <1 (-) 0 (-) >0.05
rs7556421 chr1:53619482 SLC1A7 [+11193bp] C - 13 T vs. C 0.492 (T) 0.45 (C) <1 (-) 0 (-) >0.05
rs1288336 chr1:53630010 SLC1A7 [+21721bp] C - 13 C vs. G 0.083 (C) - >1 (-) 0 (-) >0.05
rs34549019 chr1:53611275 SLC1A7 [+2986bp] C - 13 T vs. C 0.092 (C) 0.042 (C) <1 (-) 0 (-) >0.05
rs116623976 chr1:53569237 SLC1A7 C - 7 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs78250534 chr1:53612267 SLC1A7 [+3978bp] C - 13 T vs. C 0.108 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs4926960 chr1:53625039 SLC1A7 [+16750bp] C - 13 T vs. G 0.492 (T) 0.475 (G) <1 (-) 0 (-) >0.05
rs1564485 chr1:53621628 SLC1A7 [+13339bp] C - 13 A vs. T 0.492 (T) 0.467 (A) >1 (-) 0 (-) >0.05
rs1769316 chr1:53537266 PODN C - 11 A vs. G 0.375 (A) 0.283 (G) <1 (-) 0 (-) >0.05
rs1288339 chr1:53628562 SLC1A7 [+20273bp] C - 13 T vs. C 0.108 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs1295454 chr1:53627718 SLC1A7 [+19429bp] C - 13 T vs. C 0.108 (C) 0.042 (C) <1 (-) 0 (-) >0.05
rs12747412 chr1:53503282 SCP2 C - 12 T vs. C 0.483 (T) - >1 (-) 0 (-) >0.05
rs1288346 chr1:53622016 SLC1A7 [+13727bp] C - 13 T vs. C 0.108 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs1288349 chr1:53623664 SLC1A7 [+15375bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1288352 chr1:53624435 SLC1A7 [+16146bp] C - 13 T vs. C 0.108 (C) - <1 (-) 0 (-) >0.05
rs1288351 chr1:53624338 SLC1A7 [+16049bp] C - 13 A vs. G 0.108 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs1288386 chr1:53535478 PODN C - 12 A vs. G 0.358 (A) 0.383 (G) <1 (-) 5 (-) >0.05
rs35959571 chr1:53625090 SLC1A7 [+16801bp] C - 13 C vs. G 0.108 (C) 0.042 (C) >1 (-) 0 (-) >0.05
rs35658259 chr1:53628789 SLC1A7 [+20500bp] C - 13 A vs. T 0.108 (A) - >1 (-) 0 (-) >0.05
rs71654987 chr1:53612165 SLC1A7 [+3876bp] C - 13 A vs. G 0.108 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs1288342 chr1:53619319 SLC1A7 [+11030bp] C - 13 A vs. T 0.108 (T) - <1 (-) 0 (-) >0.05
rs12746080 chr1:53633492 SLC1A7 [+25203bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs1288375 chr1:53579583 SLC1A7 C - 12 A vs. G 0.392 (G) 0.142 (A) >1 (-) 41 (-) >0.05
rs116409305 chr1:53577298 SLC1A7 C - 8 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs1288341 chr1:53625839 SLC1A7 [+17550bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1769309 chr1:53590871 SLC1A7 C - 13 A vs. G 0.425 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs12750628 chr1:53609793 SLC1A7 [+1504bp] C - 13 A vs. G 0.408 (A) 0.333 (A) >1 (-) 0 (-) >0.05
rs12140961 chr1:53631029 SLC1A7 [+22740bp] C - 13 A vs. G 0.408 (A) 0.117 (A) >1 (-) 0 (-) >0.05
rs2790427 chr1:53530786 PODN C - 12 A vs. G 0.35 (G) - >1 (-) 0 (-) >0.05
rs12038500 chr1:53627986 SLC1A7 [+19697bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1298238 chr1:53633248 SLC1A7 [+24959bp] C - 13 A vs. G 0.375 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs11206111 chr1:53609496 SLC1A7 [+1207bp] C - 13 T vs. C 0.417 (T) 0.325 (T) >1 (-) 0 (-) >0.05
rs3766776 chr1:53567618 SLC1A7 C - 13 A vs. C 0.092 (A) 0.442 (A) <1 (-) 0 (-) >0.05
rs931158 chr1:53598630 SLC1A7 C - 13 A vs. G 0.275 (A) 0.342 (A) >1 (-) 34 (-) >0.05
rs74082711 chr1:53588126 SLC1A7 C - 6 A vs. G - - >1 (-) 0 (-) >0.05
rs114921772 chr1:53602874 SLC1A7 C - 13 A vs. G 0.008 (A) - <1 (-) 16 (-) >0.05
rs6668221 chr1:53649516 CPT2 [-12585bp] C - 9 A vs. G 0.017 (G) 0.058 (G) <1 (-) 37 (-) >0.05
rs36026049 chr1:53587664 SLC1A7 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs12760665 chr1:53602291 SLC1A7 C - 13 A vs. T 0.3 (A) - >1 (-) 31 (-) >0.05
rs1769299 chr1:53585723 SLC1A7 C - 13 T vs. G 0.458 (G) 0.325 (T) <1 (-) 0 (-) >0.05
rs12031872 chr1:53602310 SLC1A7 C - 5 A vs. T - - >1 (-) 0 (-) >0.05
rs78214130 chr1:53603071 SLC1A7 C - 11 T vs. C - - <1 (-) 26 (-) >0.05
rs1679977 chr1:53588494 SLC1A7 C - 13 A vs. G 0.433 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs111985904 chr1:53602464 SLC1A7 C - 13 A vs. G - - <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.