SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs111324816 chr1:53602012 SLC1A7 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs12402097 chr1:53601392 SLC1A7 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs112244720 chr1:53602026 SLC1A7 C - 13 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs6694665 chr1:53604599 SLC1A7 C - 13 A vs. G 0.042 (A) - <1 (-) 0 (-) >0.05
rs59925516 chr1:53604780 SLC1A7 C - 13 T vs. G 0.042 (T) - <1 (-) 0 (-) >0.05
rs12119155 chr1:53626467 SLC1A7 [+18178bp] C - 13 T vs. C 0.475 (T) 0.467 (C) <1 (-) 0 (-) >0.05
rs1288362 chr1:53513437 SCP2 C - 12 T vs. C 0.367 (C) 0.292 (C) >1 (-) 0 (-) >0.05
rs146215744 chr1:53592869 SLC1A7 C - 12 T vs. C - - <1 (-) 32 (-) >0.05
rs75431081 chr1:53605304 SLC1A7 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs77577223 chr1:53605727 SLC1A7 C - 13 A vs. G 0.042 (G) - >1 (-) 0 (-) >0.05
rs77246668 chr1:53605608 SLC1A7 C - 13 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs58722687 chr1:53604717 SLC1A7 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs115076220 chr1:53640300 CPT2 [-21801bp] C - 7 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs144145830 chr1:53624083 SLC1A7 [+15794bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs115643337 chr1:53623911 SLC1A7 [+15622bp] C - 13 T vs. C 0.042 (C) - >1 (-) 0 (-) >0.05
rs145346903 chr1:53599073 SLC1A7 C - 4 T vs. C - - <1 (-) 35 (-) >0.05
rs12408730 chr1:53611605 SLC1A7 [+3316bp] C - 13 T vs. C 0.033 (T) - <1 (-) 3 (-) >0.05
rs1383599 chr1:53592123 SLC1A7 C - 11 C vs. G 0.017 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs2806271 chr1:53587718 SLC1A7 C - 13 T vs. C 0.45 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs12087013 chr1:53568171 SLC1A7 C - 12 A vs. G - 0.225 (G) >1 (-) 0 (-) >0.05
rs11590819 chr1:53597998 SLC1A7 C - 13 A vs. G 0.092 (A) 0.025 (A) >1 (-) 0 (-) >0.05
rs80163194 chr1:53615668 SLC1A7 [+7379bp] C - 13 A vs. G - - >1 (-) 2 (-) >0.05
rs11206106 chr1:53597703 SLC1A7 C - 13 A vs. G 0.167 (A) 0.258 (A) <1 (-) 14 (-) >0.05
rs3766791 chr1:53588988 SLC1A7 C - 13 A vs. G 0.2 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs4926955 chr1:53598104 SLC1A7 C - 13 A vs. G 0.167 (G) 0.242 (G) >1 (-) 14 (-) >0.05
rs936642 chr1:53586380 SLC1A7 C - 13 A vs. C 0.2 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs12406773 chr1:53600917 SLC1A7 C - 13 T vs. C 0.258 (T) 0.317 (T) >1 (-) 18 (-) >0.05
rs1288345 chr1:53621394 SLC1A7 [+13105bp] C - 13 A vs. C 0.242 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs3766795 chr1:53591707 SLC1A7 C - 13 T vs. C 0.208 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs3820202 chr1:53587612 SLC1A7 C - 13 T vs. G 0.2 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs11206094 chr1:53567788 SLC1A7 C - 13 T vs. C - 0.233 (C) >1 (-) 0 (-) >0.05
rs1296145 chr1:53623538 SLC1A7 [+15249bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs74082709 chr1:53586784 SLC1A7 C - 7 C vs. G - - >1 (-) 0 (-) >0.05
rs74446923 chr1:53628545 SLC1A7 [+20256bp] C - 9 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05
rs1288363 chr1:53608781 SLC1A7 [+492bp] C - 13 C vs. G 0.233 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs12738223 chr1:53607004 SLC1A7 C - 13 T vs. C 0.45 (C) 0.358 (C) >1 (-) 0 (-) >0.05
rs1679934 chr1:53611964 SLC1A7 [+3675bp] C - 13 A vs. G 0.233 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs141267023 chr1:53541458 PODN C - 9 A vs. G - - <1 (-) 55 (-) >0.05
rs2242275 chr1:53569432 SLC1A7 C - 10 T vs. C - 0.217 (T) <1 (-) 0 (-) >0.05
rs11206101 chr1:53570659 SLC1A7 C - 13 A vs. G - 0.217 (A) <1 (-) 0 (-) >0.05
rs12403742 chr1:53607630 SLC1A7 C - 13 T vs. C 0.275 (C) 0.358 (C) <1 (-) 8 (-) >0.05
rs2806274 chr1:53602711 SLC1A7 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs10888769 chr1:53616806 SLC1A7 [+8517bp] C - 13 A vs. G 0.233 (G) - <1 (-) 0 (-) >0.05
rs1288331 chr1:53631049 SLC1A7 [+22760bp] C - 13 T vs. C 0.333 (C) 0.283 (C) >1 (-) 0 (-) >0.05
rs1288344 chr1:53621345 SLC1A7 [+13056bp] C - 13 T vs. G 0.233 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs1288332 chr1:53630960 SLC1A7 [+22671bp] C - 13 A vs. G 0.333 (A) 0.283 (A) <1 (-) 0 (-) >0.05
rs74807762 chr1:53560171 SLC1A7 C - 13 A vs. G - 0.233 (A) <1 (-) 0 (-) >0.05
rs2388 chr1:53620340 SLC1A7 [+12051bp] C - 13 T vs. C 0.233 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs1288343 chr1:53619912 SLC1A7 [+11623bp] C - 13 A vs. G 0.242 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs1288372 chr1:53577284 SLC1A7 C - 12 A vs. G 0.333 (G) 0.383 (G) >1 (-) 27 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.