SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1288371 chr1:53576592 SLC1A7 C - 12 T vs. C 0.333 (T) 0.208 (T) <1 (-) 34 (-) >0.05
rs11206104 chr1:53592830 SLC1A7 C - 13 A vs. G 0.2 (G) 0.317 (G) <1 (-) 35 (-) >0.05
rs12089128 chr1:53557644 SLC1A7 C - 13 T vs. C - 0.233 (T) <1 (-) 0 (-) >0.05
rs72670883 chr1:53598160 SLC1A7 C - 13 T vs. C 0.2 (T) 0.283 (T) >1 (-) 18 (-) >0.05
rs7516241 chr1:53571730 SLC1A7 C - 13 T vs. C - 0.225 (T) <1 (-) 0 (-) >0.05
rs138386728 chr1:53616969 SLC1A7 [+8680bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs1077467 chr1:53542533 PODN C - 11 T vs. G - 0.217 (T) >1 (-) 0 (-) >0.05
rs75990890 chr1:53557352 SLC1A7 C - 13 C vs. G - 0.242 (C) <1 (-) 0 (-) >0.05
rs899976 chr1:53593813 SLC1A7 C - 13 A vs. G 0.225 (A) 0.325 (A) >1 (-) 34 (-) >0.05
rs2306461 chr1:53556532 SLC1A7 C - 13 A vs. G - 0.225 (A) <1 (-) 0 (-) >0.05
rs899975 chr1:53593874 SLC1A7 C - 13 T vs. C 0.217 (T) 0.342 (T) >1 (-) 35 (-) >0.05
rs34418279 chr1:53608425 SLC1A7 [+136bp] C - 13 A vs. C 0.275 (A) 0.358 (A) >1 (-) 7 (-) >0.05
rs78679596 chr1:53605035 SLC1A7 C - 13 T vs. C 0.017 (T) - <1 (-) 5 (-) >0.05
rs1299859 chr1:53596148 SLC1A7 C - 13 T vs. G 0.083 (T) - >1 (-) 0 (-) >0.05
rs3766794 chr1:53591463 SLC1A7 C - 13 A vs. G 0.133 (A) 0.233 (A) <1 (-) 44 (-) >0.05
rs58600784 chr1:53554736 SLC1A7 C - 13 T vs. C - 0.225 (T) <1 (-) 0 (-) >0.05
rs111850585 chr1:53574992 SLC1A7 C - 7 A vs. T - - <1 (-) 0 (-) >0.05
rs41294752 chr1:53551064 PODN C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs6666264 chr1:53586011 SLC1A7 C - 13 A vs. G 0.408 (A) 0.35 (G) >1 (-) 0 (-) >0.05
rs1288391 chr1:53545479 PODN C - 13 A vs. C 0.308 (C) 0.267 (A) <1 (-) 0 (-) >0.05
rs1383600 chr1:53591846 SLC1A7 C - 13 A vs. G 0.1 (G) 0.308 (G) <1 (-) 9 (-) >0.05
rs34203701 chr1:53573841 SLC1A7 C - 12 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs6694834 chr1:53587179 SLC1A7 C - 13 T vs. C 0.417 (T) 0.35 (C) >1 (-) 0 (-) >0.05
rs1047741 chr1:53553069 SLC1A7 C - 13 A vs. G - 0.233 (A) <1 (-) 0 (-) >0.05
rs35027235 chr1:53656293 CPT2 [-5808bp] C - 13 T vs. C 0.383 (T) 0.458 (C) <1 (-) 0 (-) >0.05
rs12738846 chr1:53607194 SLC1A7 C - 13 A vs. G 0.292 (A) 0.358 (A) >1 (-) 16 (-) >0.05
rs7556017 chr1:53582419 SLC1A7 C - 6 A vs. G - - >1 (-) 0 (-) >0.05
rs75287840 chr1:53567492 SLC1A7 C - 9 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs66480425 chr1:53605310 SLC1A7 C - 13 C vs. G 0.292 (C) 0.35 (C) >1 (-) 18 (-) >0.05
rs116151125 chr1:53642460 CPT2 [-19641bp] C - 8 T vs. C 0.017 (T) - <1 (-) 21 (-) >0.05
rs12095038 chr1:53561879 SLC1A7 C - 9 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs61768148 chr1:53589404 SLC1A7 C - 13 T vs. G 0.175 (T) 0.208 (T) <1 (-) 43 (-) >0.05
rs7552743 chr1:53611537 SLC1A7 [+3248bp] C - 13 A vs. G 0.383 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs7531069 chr1:53611540 SLC1A7 [+3251bp] C - 13 T vs. C 0.383 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs7523531 chr1:53657086 CPT2 [-5015bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs7549319 chr1:53657567 CPT2 [-4534bp] C - 13 T vs. C 0.392 (T) 0.483 (T) <1 (-) 0 (-) >0.05
rs35036005 chr1:53605013 SLC1A7 C - 13 T vs. C 0.292 (T) 0.35 (T) >1 (-) 19 (-) >0.05
rs874348 chr1:53631805 SLC1A7 [+23516bp] C - 13 T vs. C 0.442 (T) 0.325 (T) >1 (-) 0 (-) >0.05
rs2806272 chr1:53611040 SLC1A7 [+2751bp] C - 13 A vs. T 0.383 (A) 0.35 (A) <1 (-) 0 (-) >0.05
rs10888771 chr1:53617071 SLC1A7 [+8782bp] C - 13 A vs. G 0.4 (G) 0.35 (G) >1 (-) 0 (-) >0.05
rs11206117 chr1:53615701 SLC1A7 [+7412bp] C - 13 T vs. C 0.4 (T) 0.367 (T) <1 (-) 0 (-) >0.05
rs72670860 chr1:53563266 SLC1A7 C - 12 C vs. G 0.125 (G) - >1 (-) 4 (-) >0.05
rs3766781 chr1:53579182 SLC1A7 C - 12 A vs. G 0.267 (A) 0.208 (A) <1 (-) 19 (-) >0.05
rs12240252 chr1:53593163 SLC1A7 C - 13 A vs. G 0.183 (A) 0.325 (A) >1 (-) 24 (-) >0.05
rs1288402 chr1:53555071 SLC1A7 C - 13 A vs. G 0.308 (G) 0.3 (A) <1 (-) 0 (-) >0.05
rs72670876 chr1:53594658 SLC1A7 C - 13 T vs. C - - <1 (-) 51 (-) >0.05
rs1288353 chr1:53624820 SLC1A7 [+16531bp] C - 13 T vs. C 0.408 (T) 0.425 (T) >1 (-) 0 (-) >0.05
rs12410239 chr1:53657595 CPT2 [-4506bp] C - 13 A vs. T 0.392 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs1288337 chr1:53630003 SLC1A7 [+21714bp] C - 13 A vs. G 0.425 (A) 0.342 (A) <1 (-) 0 (-) >0.05
rs11206110 chr1:53609355 SLC1A7 [+1066bp] C - 13 A vs. T 0.45 (A) 0.333 (A) >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.