SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1320594 chr1:53610372 SLC1A7 [+2083bp] C - 13 A vs. C 0.45 (A) 0.333 (A) >1 (-) 0 (-) >0.05
rs35316080 chr1:53656676 CPT2 [-5425bp] C - 13 A vs. G 0.4 (G) 0.433 (A) >1 (-) 0 (-) >0.05
rs10888768 chr1:53615541 SLC1A7 [+7252bp] C - 13 T vs. C 0.4 (C) 0.35 (C) >1 (-) 0 (-) >0.05
rs2486634 chr1:53610852 SLC1A7 [+2563bp] C - 13 C vs. G 0.4 (G) 0.408 (G) <1 (-) 0 (-) >0.05
rs1288333 chr1:53630914 SLC1A7 [+22625bp] C - 13 C vs. G 0.417 (G) 0.333 (G) >1 (-) 0 (-) >0.05
rs3766804 chr1:53594205 SLC1A7 C - 13 T vs. C 0.208 (C) 0.275 (C) >1 (-) 0 (-) >0.05
rs12731127 chr1:53625626 SLC1A7 [+17337bp] C - 13 A vs. G 0.283 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs1288350 chr1:53624259 SLC1A7 [+15970bp] C - 13 A vs. G 0.417 (G) 0.425 (G) <1 (-) 0 (-) >0.05
rs6687909 chr1:53547800 PODN C - 12 A vs. G - 0.233 (G) >1 (-) 24 (-) >0.05
rs1679932 chr1:53611453 SLC1A7 [+3164bp] C - 13 T vs. C 0.383 (T) 0.342 (T) <1 (-) 0 (-) >0.05
rs11206114 chr1:53610122 SLC1A7 [+1833bp] C - 13 A vs. G 0.383 (G) 0.35 (G) >1 (-) 0 (-) >0.05
rs72907026 chr1:53571834 SLC1A7 C - 6 T vs. C - - <1 (-) 36 (-) >0.05
rs10888770 chr1:53616916 SLC1A7 [+8627bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs11206113 chr1:53610094 SLC1A7 [+1805bp] C - 13 A vs. G 0.383 (A) 0.35 (A) <1 (-) 0 (-) >0.05
rs1288347 chr1:53622093 SLC1A7 [+13804bp] C - 13 A vs. G 0.4 (A) 0.408 (A) >1 (-) 0 (-) >0.05
rs1679936 chr1:53613018 SLC1A7 [+4729bp] C - 13 C vs. G 0.4 (G) 0.35 (G) >1 (-) 0 (-) >0.05
rs1679931 chr1:53611451 SLC1A7 [+3162bp] C - 13 A vs. G 0.375 (A) 0.35 (A) <1 (-) 0 (-) >0.05
rs1679930 chr1:53611144 SLC1A7 [+2855bp] C - 13 T vs. C 0.383 (T) 0.358 (T) <1 (-) 0 (-) >0.05
rs1769320 chr1:53611606 SLC1A7 [+3317bp] C - 13 A vs. G 0.383 (A) 0.35 (A) <1 (-) 0 (-) >0.05
rs79149207 chr1:53628559 SLC1A7 [+20270bp] C - 13 A vs. G 0.058 (A) - <1 (-) 0 (-) >0.05
rs78003315 chr1:53655037 CPT2 [-7064bp] C - 12 A vs. G - 0.033 (A) <1 (-) 0 (-) >0.05
rs12124028 chr1:53602831 SLC1A7 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs76071772 chr1:53652710 CPT2 [-9391bp] C - 12 T vs. C 0.017 (T) - <1 (-) 0 (-) >0.05
rs1679933 chr1:53611699 SLC1A7 [+3410bp] C - 13 A vs. G 0.383 (G) 0.35 (G) >1 (-) 0 (-) >0.05
rs10157941 chr1:53548986 PODN C - 13 C vs. G 0.275 (G) 0.217 (G) <1 (-) 4 (-) >0.05
rs4926961 chr1:53625057 SLC1A7 [+16768bp] C - 13 C vs. G 0.4 (G) 0.425 (G) <1 (-) 0 (-) >0.05
rs138336526 chr1:53627978 SLC1A7 [+19689bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs4926959 chr1:53606392 SLC1A7 C - 13 T vs. C 0.383 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs6588471 chr1:53644967 CPT2 [-17134bp] C - 13 T vs. C 0.458 (T) 0.133 (T) <1 (-) 14 (-) >0.05
rs17377317 chr1:53587022 SLC1A7 C - 12 T vs. C 0.017 (T) - >1 (-) 6 (-) >0.05
rs1288408 chr1:53558792 SLC1A7 C - 13 A vs. G 0.275 (G) 0.25 (G) <1 (-) 4 (-) >0.05
rs1288369 chr1:53575575 SLC1A7 C - 12 T vs. C 0.408 (T) 0.258 (T) <1 (-) 40 (-) >0.05
rs1288338 chr1:53628815 SLC1A7 [+20526bp] C - 13 T vs. C 0.233 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs1288388 chr1:53544439 PODN C - 13 A vs. G 0.3 (G) 0.3 (A) <1 (-) 0 (-) >0.05
rs1288370 chr1:53576497 SLC1A7 C - 12 A vs. G 0.408 (A) 0.267 (A) <1 (-) 40 (-) >0.05
rs77433702 chr1:53566167 SLC1A7 C - 13 T vs. C 0.017 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs115644625 chr1:53566032 SLC1A7 C - 13 T vs. C 0.033 (C) - <1 (-) 0 (-) >0.05
rs11206108 chr1:53602687 SLC1A7 C - 13 A vs. G 0.375 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs1288340 chr1:53628061 SLC1A7 [+19772bp] C - 13 A vs. G 0.233 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs7516971 chr1:53626734 SLC1A7 [+18445bp] C - 13 C vs. G 0.283 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs74082782 chr1:53596099 SLC1A7 C - 13 T vs. C 0.083 (T) - >1 (-) 0 (-) >0.05
rs17107896 chr1:53552265 SLC1A7 [-590bp] C - 13 A vs. G - 0.233 (G) >1 (-) 0 (-) >0.05
rs17107817 chr1:53534357 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs57814160 chr1:53597481 SLC1A7 C - 13 A vs. G 0.167 (G) 0.3 (G) >1 (-) 50 (-) >0.05
rs11206107 chr1:53601701 SLC1A7 C - 13 A vs. G 0.417 (A) 0.358 (A) <1 (-) 0 (-) >0.05
rs1288393 chr1:53545763 PODN C - 13 A vs. G 0.317 (G) 0.292 (A) <1 (-) 0 (-) >0.05
rs1288360 chr1:53596328 SLC1A7 C - 13 A vs. G 0.083 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs1679966 chr1:53591918 SLC1A7 C - 13 A vs. C 0.075 (C) 0.158 (C) <1 (-) 0 (-) >0.05
rs3766800 chr1:53593913 SLC1A7 C - 13 A vs. G 0.158 (G) 0.3 (G) >1 (-) 49 (-) >0.05
rs11206109 chr1:53606080 SLC1A7 C - 13 T vs. C 0.283 (T) 0.283 (T) >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.